PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600444.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family SBP
Protein Properties Length: 524aa    MW: 59493.8 Da    PI: 7.1438
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600444.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.52.8e-41216291277
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     Cqv gC++dls+ k+yh+rhkvC+ hsk ++v+v+g+eqrfCqqCsrfh l efDe+krsCr+rLa+hnerrrk+q
  XP_009600444.1 216 CQVYGCNKDLSSSKDYHKRHKVCDEHSKFAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRKRLAGHNERRRKPQ 291
                     **************************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.2E-33210277IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.394213290IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.37E-39214295IPR004333Transcription factor, SBP-box
PfamPF031101.1E-31216289IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MDYALEGRGL LFPDNIEMPV GALAKRNIVK DWNFKNPFSN VDRSIFGTIQ EITVNTEFPE  60
SGIVDILEKC TSSKQWLGGF GAETVDASRS MLSTSVITLD PILGEVELEE RFNHMAKRSN  120
DPISLPIGLK LEQSIEHGEV RSSQSSNGIS VLPTEKDYSH SPFCQVRDHR KEETIVYREV  180
KSNSSLMENS ALSSLEPLLL GKRSRTTNVH SQVPLCQVYG CNKDLSSSKD YHKRHKVCDE  240
HSKFAKVIVN GIEQRFCQQC SRFHLLAEFD EGKRSCRKRL AGHNERRRKP QFDTHWDSRL  300
LDMTSQRTAP FLFPEIRLGS SFCQERFEDH SKHIKMEEKP ICISQLAMAV TKKQSPSKSL  360
QHHHGTRKEN SSKIHLGATL SVEELSSGQN SACALSLLSA HSQHHLHNLE NYCAHLKRDH  420
NPEDFCELSA SRSFTSNELY SCEVIGTDRI VQVLDDSQAV STDDLRERRV RRSNSMNSKH  480
DLSPEDGPTV DLVQLSSHLQ RVEQLKNSDQ AKQENDIFRC FTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-28211289684squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC0732950.0LC073295.1 Nicotiana tabacum NtabSPL6-7 mRNA for squamosa promoter binding protein NtabSPL6-7, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600444.10.0PREDICTED: squamosa promoter-binding-like protein 6
RefseqXP_018626210.10.0PREDICTED: squamosa promoter-binding-like protein 6
TrEMBLA0A125SZN40.0A0A125SZN4_TOBAC; Squamosa promoter binding protein NtabSPL6-7
STRINGXP_009600444.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68311933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69170.17e-47SBP family protein