PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600608.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 1563aa    MW: 170737 Da    PI: 6.7449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600608.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH185.2e-0615401563226
                      -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                      ++++C+ f+++G Ck G++C + H+
  XP_009600608.1 1540 GQRICK-FYESGRCKKGSSCDYLHP 1563
                      6899**.8899*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.44E-885157IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-8106164IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.564110176IPR019787Zinc finger, PHD-finger
SMARTSM002493.1E-7112158IPR001965Zinc finger, PHD-type
CDDcd155682.10E-19112157No hitNo description
PROSITE patternPS013590113173IPR019786Zinc finger, PHD-type, conserved site
SuperFamilySSF475923.71E-19365442IPR003121SWIB/MDM2 domain
Gene3DG3DSA:1.10.245.101.1E-24366449IPR003121SWIB/MDM2 domain
SMARTSM001515.2E-4368446IPR019835SWIB domain
PfamPF022012.5E-13369441IPR003121SWIB/MDM2 domain
PROSITE profilePS5136024.497499632IPR004343Plus-3 domain
SMARTSM007191.6E-38499609IPR004343Plus-3 domain
SuperFamilySSF1590421.14E-29500628IPR004343Plus-3 domain
PfamPF031269.6E-22504607IPR004343Plus-3 domain
SuperFamilySSF552779.42E-15785849IPR003169GYF domain
CDDcd000724.43E-15797853No hitNo description
PROSITE profilePS5082914.377797850IPR003169GYF domain
SMARTSM004441.4E-10798852IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.5E-14799850IPR003169GYF domain
PfamPF022131.7E-9800841IPR003169GYF domain
SuperFamilySSF902295.02E-615381562IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61915381563IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-415421562IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1563 aa     Download sequence    Send to blast
MDGGNSSSEL YRPCVQQAHS LSFDGSTVTS MGLQGSEQYS SVQYMGDFQL VGVPAAVTVG  60
SPTTVAVDGR TSVANVIGDG VEKRKRGRPP RNHTTVAKPP PPKKPREEDE DVCFICFDGG  120
SLVLCDRKGC PKAYHPACIK RDEAFFRSKA KWNCGWHICS VCQKASHYLC YTCTYSLCKA  180
CTKNADYLCV RGNKGFCSTC MRTIMLIENK DQANKEMVQV DFDDKSSWEY LFKVYWVILK  240
EKLSLTLDEL LQAKNPWKES DAVHGKRQLM PCGHYVANDG KSIAGKSFDY IEQKKPIEPL  300
ELSKKDPPTA EIRAVSDSGN MSILSSTPLL ELTKPVQELK VQNEDCLRSK RESTVAETSL  360
NGCMEWASKE LLDFVAHMKD GDTCAISQFD VQALLLDYIK RNNLRDPRRK SQIICDLRLK  420
SLFGKPRVGH IEMLKLLEFH FLIKEESKKS AFIPAGIVGT MTSHVEPDDS NDIPSSKKRK  480
TRKNGEVKMT QINLDEYAAI DAHNINFIYL RRDLMETLAE DVEKFHDRVI GSVVRIRIPG  540
NDQKQEIYRL VHVVGTSKSS EPYKIRDKTV DVLLEVLNLD KKEALSIDSI SNQDFCEDEC  600
RRLRQSIKCG LVKRLTVGEI QKKAMELRAV KLNDSLEAEI LRLNHLRDRA SEKGHKKELR  660
ECIEKLELLK TPEERQRRLL EIPEVHADPM MDPDYESEGD DGGSNYKRKV EYLAPRCTRI  720
SRRDEKFMSS GSLAKEEGSV MARCRMSEKR EACGSNILDK LGNRLTAEQA VDRSGSETSI  780
ASLSPVNSSS ANSIETDKLW HYRDPAGRIQ GPFSVMQLRK WNTSGLFPPE MRIWTNHEHD  840
DSILLTNALK GLFHKEPQVH GKTSSQSWEP VASDSRASVR WSETATGSGG ECGKREAPGH  900
PHKANYHSNG NTEFTRMNGL SPSFPQCLDS LKGNSSCSDK PQLPSPVPSS SQREVILALP  960
RQERGNANDN CRPATDHGTQ NSRGSAMCQI NDGCGHNTQS NSRNLGSSLG QNPGSFTSNR  1020
YTINLDSGSR FASATKSSDS FEQKGNMSLP DLPSPTPETS YGELEAQAAE KLLLLSSVIP  1080
VCGSDNHDLP SPTPISDRET QGGHAAENKE SVPSSLPVQE SGHKWSSASS PVVGGVQLRE  1140
IADGCGRSSP AAKPSTEEWD SGIVSASVSA SSQKPAEAVG NNVATPMSKS NQLTAKPSTE  1200
EWDSGIVSSS SLKPAEAVGN HVASPTSNAD QLTAKPSTEE WDSGLVSVSS AKPAEAVGDH  1260
VATPTSNAGQ LNHTSPSHTV SNFFGEPIEF STLAEESVSD LLAEVDAMES QNQNNMGSPT  1320
SAMRCGEEMI PGCRNDCFSP IEELSPTHDP VRSDALSSTG DLQLPCQSTV TDETVGASRA  1380
DAFDPLRRSG GNSSTSSEGE TKSADVLFSQ GDAGSNIPCT ISQTTAFSAM GRNTGLEGMT  1440
SGRGAAPGNP IWGGPVQGYA NVGFNSSMGA AWGNSHMNRG APFTGNAVWD SQRRYAGERS  1500
GGPREWALQG GESGFGRGRS SWNRQQPYGG GGYSRPPPKG QRICKFYESG RCKKGSSCDY  1560
LHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnd_C5e-14104179981Histone-lysine N-methyltransferase NSD3
4gne_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gnf_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_A5e-14104179981Histone-lysine N-methyltransferase NSD3
4gng_D5e-14104179981Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2414220.0AC241422.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-212h22 map 1, complete sequence.
GenBankAC2414250.0AC241425.15 Solanum lycopersicum strain Heinz 1706 clone slm-130o13 map 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600608.10.0PREDICTED: zinc finger CCCH domain-containing protein 44-like
TrEMBLA0A1S3XN650.0A0A1S3XN65_TOBAC; zinc finger CCCH domain-containing protein 44-like
STRINGXP_009600608.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21811516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51120.10.0DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding