PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600619.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CAMTA
Protein Properties Length: 1055aa    MW: 118444 Da    PI: 5.7339
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600619.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.21.2e-56201363118
            CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 
                     +e ++rwl++ ei++iL n++k+++t e+++rp sgs++L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+ee+ +fqr
  XP_009600619.1  20 SEvQHRWLRPAEICEILRNYKKFHITPEAPHRPVSGSVFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEEDDNFQR 114
                     5559******************************************************************************************* PP

            CG-1  97 rcywlLeeelekivlvhylevk 118
                     r+yw+Le++l +iv+vhylevk
  XP_009600619.1 115 RSYWMLEQDLMHIVFVHYLEVK 136
                     *******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143781.79915141IPR005559CG-1 DNA-binding domain
SMARTSM010762.2E-7918136IPR005559CG-1 DNA-binding domain
PfamPF038597.5E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.1E-6467555IPR013783Immunoglobulin-like fold
SuperFamilySSF812962.18E-17469555IPR014756Immunoglobulin E-set
PfamPF018338.7E-7469554IPR002909IPT domain
SuperFamilySSF484038.86E-18651763IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.9E-17652765IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029718.961652773IPR020683Ankyrin repeat-containing domain
CDDcd002041.71E-15665761No hitNo description
PROSITE profilePS500888.816669701IPR002110Ankyrin repeat
SMARTSM002483400669698IPR002110Ankyrin repeat
SMARTSM002480.0036702731IPR002110Ankyrin repeat
PROSITE profilePS500889.484702734IPR002110Ankyrin repeat
SMARTSM00248900741770IPR002110Ankyrin repeat
SuperFamilySSF525405.31E-7876927IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000155876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.968877906IPR000048IQ motif, EF-hand binding site
PfamPF006120.0049878897IPR000048IQ motif, EF-hand binding site
SMARTSM000159.4E-4899921IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56900924IPR000048IQ motif, EF-hand binding site
PfamPF006127.6E-5902921IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071275Biological Processcellular response to aluminum ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1055 aa     Download sequence    Send to blast
MADCGSDPSG FRLDITQILS EVQHRWLRPA EICEILRNYK KFHITPEAPH RPVSGSVFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEEDD NFQRRSYWML  120
EQDLMHIVFV HYLEVKGNKA NMGCVRSIKS AHSNYLNDCS LSDSFPRGHK KLASANADST  180
SVASTLTSAH EEAESDSHQA CSRFQSYPER ASGMDRNLVE NRDTIYSSYG SPQSSVEYTS  240
LPGIDVGEKC GLGNFASGPQ RTIDLGSQEP VSQHCSNGEI VCQDDFKNNL SVKGNWQYSF  300
GDSASQFHGQ IVNQDLIADS SYDLVNSFHN KNLSSDLYTG RGQSYLYPDE QEEQLTQLNI  360
QYLNSLVEVQ GDFNQENSMD MLGLGDYSTI KHPHLNSVKM EEGLKKVDSF SRWVVKELED  420
VEELHMQPTN RISWNVIDTE DDGSCLPTQL HVDSDSLNPS LSQEQVFSII DFSPNWAYSN  480
LETKVLITGR FLKSEGELIE CKWSCMFGEV EVPAEVLADG VLRCHAPPHK PGVLPFYVTC  540
SNRLACSEVR EFEYRLGAYQ EIGAANVSAT EMHLLERIES LMSLGPVSSC HSSDSMEAAK  600
EKHSTVNKII CMMEEENQQM IERASDYDTS QCGVKEDLFL ERKLKQNFYA WLVRQVTDDG  660
RGRTAIDDEG QGVLHLAAAL GYDWALKPIL ASGVSVDFRD MNGWTALHWA AFYGREKTVV  720
GLVSLGASPG ALTDPSAEFP LGRTPADLAS ANGHKGISGF LAESSLTTHL SKLTVTDATE  780
ELASEVSGAK VGETVTERVA VTTTGDDVPD VLSLKDSLAA IRNATQAAAR IHQIFRVQSF  840
QRKQIIERSD NELSSDENAL SIVASRACKL GQNNGIAHAA ATQIQKKFRG WNKRKEFLLI  900
RQKIVKIQAH VRGHQVRKKY KPIIWSVGIL EKVILRWRRK RSGLRGFRSE VVINKPSIQD  960
DSLPEDDYDF LKEGRKQTEV RMQKALARVK SMTQYPEGRA QYRRLLTAAE GLREVKQDGS  1020
TCIQESSEDT SYPEEELFDV ENLLDDDTFM SIAFE
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00043PBMTransfer from AT5G64220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588100.0JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600619.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A1S4BAF30.0A0A1S4BAF3_TOBAC; calmodulin-binding transcription activator 2-like isoform X1
STRINGXP_009600617.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]