PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600724.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 134aa    MW: 15604 Da    PI: 10.0605
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600724.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF511.9e-161645231
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLC 31
                    +ien+ nrqvtfskRrngi+KKA+EL +++
  XP_009600724.1 16 KIENQNNRQVTFSKRRNGIFKKANELAIMT 45
                    79*************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-10754IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.652745IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-12929IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-161175IPR002100Transcription factor, MADS-box
PfamPF003195.6E-151645IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-122944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSTRQIKGCK SVRIAKIENQ NNRQVTFSKR RNGIFKKANE LAIMTSKLDK FCCKPYSFGH  60
PNVNETIDKY LDFALNLKSK LKNTNKNLES QQECFRGPIE KMNYTEVSML KEGLEYLLLK  120
VKNYGTERGY GYEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801878.13e-66PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1U7YFG28e-65A0A1U7YFG2_NICSY; agamous-like MADS-box protein AGL62
STRINGXP_009600724.13e-94(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-13AGAMOUS-like 62