PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009600845.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 421aa    MW: 47609.8 Da    PI: 7.9658
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009600845.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.27.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
   XP_009600845.1 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding45.81.4e-1467109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+
   XP_009600845.1  67 RGTFSQEEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109
                      899*******************.*********.*********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-28664IPR009057Homeodomain-like
PROSITE profilePS5129425.558965IPR017930Myb domain
SuperFamilySSF466892.02E-2912108IPR009057Homeodomain-like
SMARTSM007171.4E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001677.62E-121761No hitNo description
Gene3DG3DSA:1.10.10.606.7E-2565116IPR009057Homeodomain-like
SMARTSM007176.4E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129420.31366116IPR017930Myb domain
PfamPF002491.7E-1367109IPR001005SANT/Myb domain
CDDcd001673.49E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENEEKASA NSNNKNSDRV SESSNNDQLN FVEAAHENVF STEKPKPYSM  180
TIMDRYPFIE TNNIAPPTHE FFTTNCKSPD FANYLSFQHL NNYTPNTNII FNKNSADMVS  240
DQFNCSLSPM SNSILNTSPL ARIKPASLTT LPPDSSFNIN KFQNWEACTI SSNSNGSSNS  300
IELQSNCSFF DNNAAAFAWG STTADGSGKP EREEIKWSEY LQTPFSLGSN TIQNHQISSQ  360
HQADLYNETK SETQFVTQGS LNLSTTTTWI QNQPQQSSLQ TANLYNSNNF QRLPAAFGQF  420
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-29121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754402e-72HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009600845.10.0PREDICTED: transcription factor MYB35-like
TrEMBLA0A1J6JTQ70.0A0A1J6JTQ7_NICAT; Transcription factor myb86
STRINGXP_009600845.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.12e-97myb domain protein 61