PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009600909.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 281aa MW: 30911.2 Da PI: 8.4287

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009600909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	96	118	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C k+Fs++ L H++ H XP_009600909.1 96 FACSFCEKRFSTSQALGGHQNAH 118 78******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.64E-6	93	123	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.4E-5	94	122	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	1.6E-5	95	119	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.718	96	123	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	98	118	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDAFSIKKTC SSEASSISAA SEEIDTNTKK MKGQVMDLGS ELKPHELSSA GVLLDLKVNN 60 GASNLELNLF NSTSSMKTSA PASESSNEAT PKTRVFACSF CEKRFSTSQA LGGHQNAHKP 120 ERALAKRRNR LVDVVSPFGP PNYHPYYNPY SSYTTHLPFH GSFPSRSSLG VQGYSSAIHK 180 PSPYNQWSSY LGYNYRFNPE KWSSSSSTLF RTENNLGIGG APLENSLKFE NKNSAKGFSV 240 RDSPVKVDDN RGGNNKRKMG LGEEDAEKNE EETEIDLDLK L

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009600909.1	0.0	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A1S3YGE3	1e-163	A0A1S3YGE3_TOBAC; zinc finger protein 1-like
STRING	XP_009600909.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3967	21	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80730.1	1e-21	zinc-finger protein 1