PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601033.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 188aa MW: 21970.1 Da PI: 9.8743

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601033.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.9	5.5e-29	28	81	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LHe F++ ve+LGG +kAtPk+++++m +kgL ++hvkSHLQ+YR XP_009601033.1 28 PRLRWTPQLHELFLQSVESLGGRNKATPKRVVQMMAIKGLKISHVKSHLQMYRN 81 9****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-26	27	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.42E-13	28	84	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-21	28	82	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	29	80	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MSYNAPEMRR ISSKKMRDIR KYKKSLAPRL RWTPQLHELF LQSVESLGGR NKATPKRVVQ 60 MMAIKGLKIS HVKSHLQMYR NMKEHLSLHV VMPDFNLSST LLVSKRSSRK QKESGSQFCC 120 KERNSSENNG ENIHYNDFQE AEGSISSGMT KEEEQYCEKE INFWPVDNHK YFDPTMENTH 180 INLDLSLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	29	83	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	29	83	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	29	83	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	29	83	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	29	83	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601033.1	1e-140	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A1S3WZA7	1e-136	A0A1S3WZA7_TOBAC; probable transcription factor KAN4
STRING	XP_009601033.1	1e-139	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	4e-25	G2-like family protein