PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601281.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 721aa MW: 81696.8 Da PI: 6.3568

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601281.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	46	1.1e-14	534	577	3	46
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++i+l++++ s++ +AA +Lgv+ ++LKriCR yGI RWP XP_009601281.1 534 HNINLKKIEDRSSMTQDAAADDLGVGKSTLKRICRLYGITRWPP 577 799****************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	12.946	520	610	IPR003035	RWP-RK domain
Pfam	PF02042	7.4E-12	535	578	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.68E-13	636	719	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.6E-13	637	715	No hit	No description
PROSITE profile	PS51745	18.834	638	720	IPR000270	PB1 domain
SMART	SM00666	4.5E-13	638	720	IPR000270	PB1 domain
Pfam	PF00564	3.3E-13	641	719	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 721 aa Download sequence Send to blast
MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFNVVT KRMAIKERVK IALQHVEKLS 60 CNYLIQYWAS IVIDGQTFLT TSDQPFGLTR LEYGLCSYRK KCLSHAIPVE LKNGTQCEND 120 FGPPGRVFKH RLPELCTDVK NYSQQEFPLR DDAVAWGIQW CYTVPVFDSS RDTFVGVLEL 180 VTSHQTNKWI FQNSVLPIFK TLQVVDLKSP DSYCPLNLKV LDDRQCALGG LYKAIEVVCQ 240 KHQFLFAQIW VSVADSWCTG KAITVRQRHI AINDNQNLSL FKYASGLQYI LEGYGVVGRA 300 FSSKSSCFCR DVTQLSIIEY PLVTCAREAG LTGCFAICLS APGNDDNIYI LEFFLPPNEL 360 LHWNLQDFVK LVLDTVKQQL HRFKVAVGHD FGEKLPVEVI KISSDDELDS FDICQTTKEL 420 HNVEPLPNGG ELMLLDTPNQ QSFSSETNQQ LSLDIDEINA ARDSIAVSEE LCNSAGSSTS 480 AETSQNKERK LQLELSTRQA KQGANAVNKR KNGIRTLTSE SEIQKERERI ERDHNINLKK 540 IEDRSSMTQD AAADDLGVGK STLKRICRLY GITRWPPKNK EKKRKCSHSR KMKSILPAEE 600 DVNASTKFQQ SSDSPNKEDT INGAKVGAHV TEIRDGTAVI TKVKYGDRML KLQLTLSSMM 660 KDLEEEVAKR VESSIESFDF TYVDKEGDTI LIKCDEDLTE CFLHCRSSEN ATVKMFITPK 720 S

Sequence ? help Back to Top

Protein Sequence Length: 721 aa Download sequence Send to blast

MESVFSEQAW SRQPNGIWVF WSERDDVEQL QNHFSFNVVT KRMAIKERVK IALQHVEKLS  60
CNYLIQYWAS IVIDGQTFLT TSDQPFGLTR LEYGLCSYRK KCLSHAIPVE LKNGTQCEND  120
FGPPGRVFKH RLPELCTDVK NYSQQEFPLR DDAVAWGIQW CYTVPVFDSS RDTFVGVLEL  180
VTSHQTNKWI FQNSVLPIFK TLQVVDLKSP DSYCPLNLKV LDDRQCALGG LYKAIEVVCQ  240
KHQFLFAQIW VSVADSWCTG KAITVRQRHI AINDNQNLSL FKYASGLQYI LEGYGVVGRA  300
FSSKSSCFCR DVTQLSIIEY PLVTCAREAG LTGCFAICLS APGNDDNIYI LEFFLPPNEL  360
LHWNLQDFVK LVLDTVKQQL HRFKVAVGHD FGEKLPVEVI KISSDDELDS FDICQTTKEL  420
HNVEPLPNGG ELMLLDTPNQ QSFSSETNQQ LSLDIDEINA ARDSIAVSEE LCNSAGSSTS  480
AETSQNKERK LQLELSTRQA KQGANAVNKR KNGIRTLTSE SEIQKERERI ERDHNINLKK  540
IEDRSSMTQD AAADDLGVGK STLKRICRLY GITRWPPKNK EKKRKCSHSR KMKSILPAEE  600
DVNASTKFQQ SSDSPNKEDT INGAKVGAHV TEIRDGTAVI TKVKYGDRML KLQLTLSSMM  660
KDLEEEVAKR VESSIESFDF TYVDKEGDTI LIKCDEDLTE CFLHCRSSEN ATVKMFITPK  720
S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	576	584	PKNKEKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018626475.1	0.0	PREDICTED: protein NLP7-like isoform X2
TrEMBL	A0A1S4BC54	0.0	A0A1S4BC54_TOBAC; protein NLP7-like isoform X1
STRING	XP_009601280.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	5e-55	Nin-like family protein