PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009601361.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 192aa    MW: 21990 Da    PI: 8.1183
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009601361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.3e-19756255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                    +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  XP_009601361.1  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARFMCG 56
                    69******9.**********8.....334**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.59E-35666No hitNo description
SMARTSM003801.1E-38770IPR001471AP2/ERF domain
PfamPF008474.9E-12756IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-21766IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-34764IPR001471AP2/ERF domain
PROSITE profilePS5103221.048764IPR001471AP2/ERF domain
PRINTSPR003673.1E-11819IPR001471AP2/ERF domain
PRINTSPR003673.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARFMCGQRAR  60
TNFPYNPNMP QTSSSKILSA NLTAKLHKCY MASLQMAKTS AQEHRIQSSH VDVLKNAPIQ  120
EHVAYEMKQQ MVVPKTSVLT HEEAANLGVK KVQDVESIPQ FVKPLEDDHI EQMIEELLDY  180
GSIELCSNVT SH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-18664160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0776263e-97AY077626.1 Lycopersicon esculentum ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601361.11e-145PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
RefseqXP_016512703.11e-145PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X2
SwissprotQ94AW51e-73ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DH561e-143A0A1S4DH56_TOBAC; ethylene-responsive transcription factor ERF003-like isoform X2
STRINGXP_009601360.11e-138(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-64ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]