PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601479.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 679aa MW: 77687.4 Da PI: 8.186

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.6e-20	62	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY e+A+ +GFs+r+++++ + + t+r fvC + g++ + ++++ +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_009601479.1 62 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNRPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHELL 155 6************9998877356667999************99******************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.9E-17	62	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-20	278	369	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	556	589	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-7	559	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	564	591	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 679 aa Download sequence Send to blast
MSEEAGQMMV LYGDSSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPTHDAA 60 YEFYAEFARG CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKAAND NRPQRNRKSS 120 RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DSDKSRILMF 180 AKTGISVQQM MRLMELEKGV EPGFLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE 240 KDPNFKYDFS LDSNNKLENI AWSYASSIQS YDVFGDAVVF DTTHRLAAFD MPLGIWVGVN 300 NYGMPCFFGC VLLREETLRS YSWSLKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMPSTK 360 HALCIWLIVS KFPSWFNAVL GVRYNDWKAE FHRLYNLESV EDFELGWRDM VNSFGLHTNR 420 HIASLFALRS LWALPYLRSH VFAGMTTAGH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD 480 FKDQAGEQQT MQQNLQNICL KTGAPMEAHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG 540 FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPDRYLPH 600 RWRRFSTPST KSLQNTHNDH TERVQLLQSM VSTLVTESAK SRERLEIATE NVSILLLKIR 660 EQPICSQGVR ELSSNQRNI

Sequence ? help Back to Top

Protein Sequence Length: 679 aa Download sequence Send to blast

MSEEAGQMMV LYGDSSDQRS LSLDDTSSTE ESPDQTRLSL ETTNDAVPYI GQRFPTHDAA  60
YEFYAEFARG CGFSIRRHRT EGKDGVGKGL TRRYFVCHRA GNTPVKAAND NRPQRNRKSS  120
RCGCQAYMRI SKTTDLGVPE WRVTGFMNHH NHELLEPNQV RFLPAYRSIS DSDKSRILMF  180
AKTGISVQQM MRLMELEKGV EPGFLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE  240
KDPNFKYDFS LDSNNKLENI AWSYASSIQS YDVFGDAVVF DTTHRLAAFD MPLGIWVGVN  300
NYGMPCFFGC VLLREETLRS YSWSLKAFLA FMNGKAPQTV LTDQNMCLKE AINLEMPSTK  360
HALCIWLIVS KFPSWFNAVL GVRYNDWKAE FHRLYNLESV EDFELGWRDM VNSFGLHTNR  420
HIASLFALRS LWALPYLRSH VFAGMTTAGH SKSINAFIQR FLSAQTRLAH FVEQVAVTVD  480
FKDQAGEQQT MQQNLQNICL KTGAPMEAHA ATVLTPFAFS KLQEQLVLAA HYASFQMEDG  540
FLVRHHTKLE GGRKVYWVPR EGIISCSCHQ FEFSGILCRH ALRVLSTGNC FQIPDRYLPH  600
RWRRFSTPST KSLQNTHNDH TERVQLLQSM VSTLVTESAK SRERLEIATE NVSILLLKIR  660
EQPICSQGVR ELSSNQRNI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601478.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_016486262.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4BBL6	0.0	A0A1S4BBL6_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
STRING	XP_009601478.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]