PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009601480.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 672aa MW: 76954.6 Da PI: 8.3805

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009601480.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.7	2.6e-20	55	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 +fY e+A+ +GFs+r+++++ + + t+r fvC + g++ + ++++ +r+r+++r+gC+a ++++k++ +w+vt + ++HnHel XP_009601480.1 55 EFYAEFARGCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPVKAANDNRPQRNRKSSRCGCQAYMRISKTTdlgVPEWRVTGFMNHHNHELL 148 6************9998877356667999************99******************99777789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.8E-17	55	148	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.6E-20	271	362	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.705	549	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-7	552	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MMVLYGDSSD QRSLSLDDTS STEESPDQTR LSLETTNDAV PYIGQRFPTH DAAYEFYAEF 60 ARGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNRPQRNR KSSRCGCQAY 120 MRISKTTDLG VPEWRVTGFM NHHNHELLEP NQVRFLPAYR SISDSDKSRI LMFAKTGISV 180 QQMMRLMELE KGVEPGFLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY 240 DFSLDSNNKL ENIAWSYASS IQSYDVFGDA VVFDTTHRLA AFDMPLGIWV GVNNYGMPCF 300 FGCVLLREET LRSYSWSLKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP STKHALCIWL 360 IVSKFPSWFN AVLGVRYNDW KAEFHRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFA 420 LRSLWALPYL RSHVFAGMTT AGHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQAGE 480 QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQM EDGFLVRHHT 540 KLEGGRKVYW VPREGIISCS CHQFEFSGIL CRHALRVLST GNCFQIPDRY LPHRWRRFST 600 PSTKSLQNTH NDHTERVQLL QSMVSTLVTE SAKSRERLEI ATENVSILLL KIREQPICSQ 660 GVRELSSNQR NI

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MMVLYGDSSD QRSLSLDDTS STEESPDQTR LSLETTNDAV PYIGQRFPTH DAAYEFYAEF  60
ARGCGFSIRR HRTEGKDGVG KGLTRRYFVC HRAGNTPVKA ANDNRPQRNR KSSRCGCQAY  120
MRISKTTDLG VPEWRVTGFM NHHNHELLEP NQVRFLPAYR SISDSDKSRI LMFAKTGISV  180
QQMMRLMELE KGVEPGFLPF TEKDVRNLLQ SFRKVDPEDE SIDLLRMCRN IKEKDPNFKY  240
DFSLDSNNKL ENIAWSYASS IQSYDVFGDA VVFDTTHRLA AFDMPLGIWV GVNNYGMPCF  300
FGCVLLREET LRSYSWSLKA FLAFMNGKAP QTVLTDQNMC LKEAINLEMP STKHALCIWL  360
IVSKFPSWFN AVLGVRYNDW KAEFHRLYNL ESVEDFELGW RDMVNSFGLH TNRHIASLFA  420
LRSLWALPYL RSHVFAGMTT AGHSKSINAF IQRFLSAQTR LAHFVEQVAV TVDFKDQAGE  480
QQTMQQNLQN ICLKTGAPME AHAATVLTPF AFSKLQEQLV LAAHYASFQM EDGFLVRHHT  540
KLEGGRKVYW VPREGIISCS CHQFEFSGIL CRHALRVLST GNCFQIPDRY LPHRWRRFST  600
PSTKSLQNTH NDHTERVQLL QSMVSTLVTE SAKSRERLEI ATENVSILLL KIREQPICSQ  660
GVRELSSNQR NI

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975513	0.0	HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009601478.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
Refseq	XP_009601480.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X2
Refseq	XP_016486262.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X1
Refseq	XP_016486263.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11-like isoform X2
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A1S4BBL6	0.0	A0A1S4BBL6_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X1
TrEMBL	A0A1S4BBR7	0.0	A0A1S4BBR7_TOBAC; protein FAR1-RELATED SEQUENCE 11-like isoform X2
STRING	XP_009601478.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]