PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602230.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 163aa MW: 18510.7 Da PI: 9.5009

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602230.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	99.4	6.6e-31	11	83	4	76
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkr 76 +++CqdCGnqakkdC++ RCRtCCksrgf+C+thvkstW p++ rr r++ ++++s+ ++++ + +a +++ XP_009602230.1 11 SSSRCQDCGNQAKKDCTYLRCRTCCKSRGFHCQTHVKSTWAPVSTRRPRHHLHQQLSTIQQQQYQLQAGPNPN 83 5679******************************************999766666655555544333322222 PP
2	DUF702	22.5	3.3e-07	86	108	132	154
DUF702 132 YqtavsigGhvfkGiLydqGlee 154 Y+ +i GhvfkGiLydqG+e+ XP_009602230.1 86 YRENHEIQGHVFKGILYDQGPEN 108 777889***************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.3E-29	12	89	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.3E-26	15	56	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	6.0E-5	86	107	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MMMREVELGS SSSRCQDCGN QAKKDCTYLR CRTCCKSRGF HCQTHVKSTW APVSTRRPRH 60 HLHQQLSTIQ QQQYQLQAGP NPNKRYRENH EIQGHVFKGI LYDQGPENRY NNMAAGESSS 120 FQQQQPPNLL TAATTSTTTA PSYPNPFSAL MPGTQFIQYP KSS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602229.1	4e-93	PREDICTED: protein SHI RELATED SEQUENCE 1-like
Refseq	XP_016478329.1	4e-93	PREDICTED: protein SHI RELATED SEQUENCE 1-like
TrEMBL	A0A1S4ANU4	9e-92	A0A1S4ANU4_TOBAC; protein SHI RELATED SEQUENCE 1-like
STRING	XP_009602229.1	2e-92	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	7e-24	SHI-related sequence3