PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602285.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 118aa MW: 13594.7 Da PI: 8.7934

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602285.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.8	3.8e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cvla yfpa+qpkkf+n+h+lFG++n++k+l++l ++++ dam+s+++e+++r + PvyG+v+ il l+qql+ + +e XP_009602285.1 10 ACAACKYQRRKCSQQCVLASYFPADQPKKFQNAHRLFGVRNIVKTLEQLdGDDQKADAMKSIIFESDMREKFPVYGCVECILYLRQQLQLALQER 104 7**********************************************445569********************************999999 PP DUF260 95 allkee 100 +++ ++ XP_009602285.1 105 EYVYTQ 110 887655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.101	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-36	10	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MTKGGTSRPA CAACKYQRRK CSQQCVLASY FPADQPKKFQ NAHRLFGVRN IVKTLEQLDG 60 DDQKADAMKS IIFESDMREK FPVYGCVECI LYLRQQLQLA LQEREYVYTQ LAIYGNNI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-27	2	115	4	115	LOB family transfactor Ramosa2.1
5ly0_B	2e-27	2	115	4	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602285.1	3e-84	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	6e-36	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A1S4C8G3	1e-79	A0A1S4C8G3_TOBAC; LOB domain-containing protein 27-like
STRING	XP_009602285.1	1e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-35	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]