PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009602536.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 287aa MW: 32308.2 Da PI: 6.6161

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009602536.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.7	1.3e-38	39	99	3	63
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++ +kcprCds+ntkfCyynnysl+qPryfCk+C+ryWtkGG+lr vPvGgg+rknk+sss XP_009602536.1 39 DEVQKCPRCDSANTKFCYYNNYSLTQPRYFCKSCKRYWTKGGTLRIVPVGGGSRKNKRSSS 99 6889*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-23	27	87	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.3E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.183	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MDMDPSSAQH LHQDMSSQTL ESMFACTKPH QEKKPKPADE VQKCPRCDSA NTKFCYYNNY 60 SLTQPRYFCK SCKRYWTKGG TLRIVPVGGG SRKNKRSSSS KRSQDQSLTA SPNQISSLTQ 120 LSYDSNDLRL ARLQNQESGQ LGLENHDISM MYRELQKTFR TEAIFSDTLH LANSENSVSC 180 DVLKNRGMCT SSAEAVVSAG FLDALRGGIL ETPINGFNHD LYYINGNMGH VENGDMGVNS 240 SEEMVTRFDQ EMRNGAITPN EETLVKEEKV RVEFCGDFRG KLMEMEI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009602536.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBL	A0A3Q7GR88	3e-97	A0A3Q7GR88_SOLLC; Uncharacterized protein
STRING	XP_009602536.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	7e-29	TARGET OF MONOPTEROS 6