PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602601.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bZIP
Protein Properties Length: 243aa    MW: 26274.2 Da    PI: 9.8195
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.41.1e-11168209546
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                     k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++L+
  XP_009602601.1 168 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQDLQ 209
                     7889*************************9888888887776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.104.0E-6140184IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003385.0E-8164227IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.358166210IPR004827Basic-leucine zipper domain
PfamPF001701.7E-8168209IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.82E-7168212No hitNo description
CDDcd147083.23E-24168219No hitNo description
PROSITE patternPS000360171186IPR004827Basic-leucine zipper domain
Gene3DG3DSA:3.30.450.403.1E-4185238IPR029016GAF domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MASKIGTAGN RSGTTGMPSF ISQIPVSNPM GTEANNTNTT RMSDFGVLEQ YLGFRIGDGA  60
NVNRSPLFNS TTATNPAMGF EVSGTINRTL APLNTSLPTS TPGSQTMQLQ SNLVSVSGTH  120
HENWGESNMA DSGSRTDTST DMDADDKNQL IEAGQSSDKS KEKVLDQKTL RRLAQNREAA  180
RKSRLRKKAY VQQLENSRLK LSQLEQDLQR ARQQGKYISN IADQSNGVGA NGMPIAHHLT  240
CVP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankNTU902140.0U90214.1 Nicotiana tabacum leucine zipper transcription factor TGA2.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602601.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-2.1-like
SwissprotO241601e-161TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A1S3Y9V61e-163A0A1S3Y9V6_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1-like
STRINGXP_009602601.11e-180(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.22e-39TGACG motif-binding factor 6