PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009602824.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 228aa    MW: 25878.3 Da    PI: 8.4271
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009602824.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-172162142
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    kri+n   r+ tfskRr g++KKA+EL++L +ae+a+++ s 
  XP_009602824.1 21 KRIDNLNSRHATFSKRRLGLFKKASELCILSGAEIAILVQSL 62
                    79*************************************984 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006620.1981361IPR002100Transcription factor, MADS-box
SMARTSM004321.9E-231373IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.5E-211483IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-111535IPR002100Transcription factor, MADS-box
PfamPF003195.2E-172270IPR002100Transcription factor, MADS-box
PRINTSPR004044.2E-113550IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MNTTTHSTVK KTQGRRKIAI KRIDNLNSRH ATFSKRRLGL FKKASELCIL SGAEIAILVQ  60
SLKRQRLFAF GHPNVDAVIN RYLIGKSSSS STADQYNVQQ NNQYYSQICR ELEADKKKKE  120
IIENSKIVNN NEGFWWNEPI DDMGIEELEE FMAALEELKK KVTMRADELS MITGSSVLPT  180
TSTINNNIAR FGAEDQFLNQ AAIDYCSSIV PYQLNYPGDG QFLSGYYD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009602824.11e-171PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6L6Y01e-129A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009602824.11e-171(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-24AGAMOUS-like 62