PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603012.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 356aa    MW: 41364.2 Da    PI: 4.6295
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603012.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.3e-31801712102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl k+ye+l d +++ lisw++ng+sf+++d ++fa +vLp++F+h+n++SF+ QLn YgF+k++ ++          eF+h+ F++gk + l++
  XP_009603012.1  80 FLLKIYEMLADIQFNPLISWNDNGTSFIIHDCHKFAAEVLPRFFRHNNISSFICQLNCYGFRKISWDK---------FEFQHECFQRGKGQWLKN 165
                     9*****************************************************************99.........67**************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikrk s
  XP_009603012.1 166 IKRKGS 171
                     ***976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004158.7E-4076169IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.104.1E-3177169IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.26E-2978169IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.1E-2880169IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-1480103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-14118130IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.1E-14131143IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGSDKGKGKM TNNIGELLEE WYEDEGLEDV QIDISMLEND DYQGENTSNE GFHGRATGAH  60
QHSFGVRNSR RNLQKRACPF LLKIYEMLAD IQFNPLISWN DNGTSFIIHD CHKFAAEVLP  120
RFFRHNNISS FICQLNCYGF RKISWDKFEF QHECFQRGKG QWLKNIKRKG SRKSEMNQQP  180
QEQGIDETVA VTMEKEIEEI REEQNAMREE IIMLQQQLNI LEKEMEDNTK QARNHVSSKK  240
AKILKYLLDP LFECIGELGR SEVAQGLEED DEIEDGVEKR KKQVEEELQG KNEGSKKIAV  300
AGVSDFKSDS DLRKMLMDEM DMNNLAQEQP DNFLESEEQA EGSSFWIDYV KQLDHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-238016929129Heat shock factor protein 1
5d5v_B3e-238016929129Heat shock factor protein 1
5d5v_D3e-238016929129Heat shock factor protein 1
5hdg_A2e-238016910110Heat shock factor protein 1
5hdn_A2e-238016910110Heat shock factor protein 1
5hdn_B2e-238016910110Heat shock factor protein 1
5hdn_C2e-238016910110Heat shock factor protein 1
5hdn_D2e-238016910110Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009790212.10.0PREDICTED: heat stress transcription factor A-7b-like
TrEMBLA0A1U7XDS20.0A0A1U7XDS2_NICSY; heat stress transcription factor A-7b-like
STRINGXP_009603012.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA140991213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.15e-31heat shock transcription factor A3