PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009603358.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 107aa MW: 12426.1 Da PI: 9.134

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009603358.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.4	5.2e-08	17	67	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR ++ ++L +++P+ +k++ + ls + + +A+ YI +L+ XP_009603358.1 17 KTVERNRRIYMKYLCSKLISVIPPrHFKPSTEMLSQQDQVDQAITYIEQLK 67 679*******************776555555**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	8.9E-7	16	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-8	16	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-4	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MESSSKYNIS SEKPDRKTVE RNRRIYMKYL CSKLISVIPP RHFKPSTEML SQQDQVDQAI 60 TYIEQLKERV EVLNRRKDEE AQGTGERSSN SKKVMTTCTL ETPAVEV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009618665.1	6e-66	PREDICTED: transcription factor ORG3-like
Refseq	XP_016456924.1	6e-66	PREDICTED: transcription factor ORG3-like
TrEMBL	A0A1S3YXK0	1e-64	A0A1S3YXK0_TOBAC; transcription factor ORG3-like
STRING	XP_009603358.1	4e-73	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6083	14	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-12	bHLH family protein