PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603434.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 547aa    MW: 59872.6 Da    PI: 8.6684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.3e-0688110123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F+r  nL+ H r H
  XP_009603434.1  88 FFCEICNKGFKRDQNLQLHRRGH 110
                     67*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.6E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-687110No hitNo description
PROSITE profilePS5015710.74188110IPR007087Zinc finger, C2H2
PfamPF121719.2E-688110IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02188110IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355120130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4153186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.31E-6160185No hitNo description
SMARTSM00355160165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MMNIHQKQQH VHIVEENMSN LTSASGEASI SASSNMNDTT TGGIFIPQNQ NPHHQQQIKK  60
KRNQAGNPDP EAEVIALSPK TLLATNRFFC EICNKGFKRD QNLQLHRRGH NLPWKLKQRT  120
NKEVIRKKVY VCPERSCVHH DASRALGDLT GIKKHFSRKH GEKKWKCEKC SKRYAVQSDC  180
KAHSKTCGTR EYRCECGTLF SRRDSFITHR AFCDTLAVES ARSAITGGNP IISFPSQAAG  240
SSSTSHMNQL QFQTPQYFNS HEFPASAAFS MKKEQPSHDF NVLRHYTEIP QWLMTCQPFV  300
GAGPGPPSSP AGFSSSVFQA TRLDQEYTQS HQDLTSTDFH DNPNPNFGAV SPHISATALL  360
QKAAELGATM SNKASASVSA SSPAHSTGPA AILMRQSPHQ THVSVTTDSA AAAGSKQIDQ  420
FGLNLSAREF ELTNSTGLIN TLGNSYGNKV AAATVPSFSF ANAAGFEGST FVDAFGGFGT  480
LNSKKDNDFN GTTLSETTSG INEDIMTKDF LGLRPLSHND IFNIAGLVNT TSSSEHDQFQ  540
NHKTWQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-31161222364Zinc finger protein JACKDAW
5b3h_F3e-31161222364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114127KLKQRTNKEVIRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX823281e-166X82328.1 S.tuberosum mRNA for DNA/RNA binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603434.10.0PREDICTED: protein indeterminate-domain 7-like isoform X2
TrEMBLA0A1J6KS430.0A0A1J6KS43_NICAT; Protein indeterminate-domain 11
TrEMBLA0A1S3Y9W40.0A0A1S3Y9W4_TOBAC; protein indeterminate-domain 7-like
TrEMBLA0A1S4CG880.0A0A1S4CG88_TOBAC; protein indeterminate-domain 7-like isoform X1
STRINGXP_009603433.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-110indeterminate(ID)-domain 7