PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009603454.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 140aa MW: 15997.1 Da PI: 10.9155

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009603454.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	84.1	1.5e-26	86	135	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++L +rFv+ave GG e+AtPk++le+m+vk+Ltl+hvkSHLQ XP_009603454.1 86 PRMRWTSTLYARFVHAVELFGGRERATPKSVLEFMDVKDLTLAHVKSHLQ 135 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-23	83	135	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.29E-12	83	136	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-20	86	138	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 140 aa Download sequence Send to blast
MNLGPDIQNY PSSPFPFSQQ PFVSSTTAVT TFPTPSSPCY INNNKSTINS SASSRPNYQS 60 HHHPQARFLR SRFYSIFPCK RSTRAPRMRW TSTLYARFVH AVELFGGRER ATPKSVLEFM 120 DVKDLTLAHV KSHLQVTHKH

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018627062.1	7e-96	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	8e-38	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	M1B6Q9	4e-42	M1B6Q9_SOLTU; Uncharacterized protein
TrEMBL	M1B6R0	1e-41	M1B6R0_SOLTU; Uncharacterized protein
STRING	XP_009603454.1	1e-100	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	7e-40	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]