PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603732.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family CO-like
Protein Properties Length: 407aa    MW: 44945 Da    PI: 5.4997
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603732.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06344439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    ++C+ ++e++ + +C+++  +lC +C  + H+       H++
  XP_009603732.1  3 HICEFCGEQRSIVYCRSDAACLCLSCDRNVHSAnalsqrHSR 44
                    68*****************************65677777765 PP
2CCT59.98.4e-21350393144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ 
  XP_009603732.1 350 RSNAVLRYKEKKKIRKFDKHVRYASRKARADVRRRVKGRFVKAG 393
                     899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.3E-8147IPR000315B-box-type zinc finger
PROSITE profilePS501199.513147IPR000315B-box-type zinc finger
CDDcd000218.48E-8447No hitNo description
PfamPF062033.0E-15350392IPR010402CCT domain
PROSITE profilePS5101714.852350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGHICEFCGE QRSIVYCRSD AACLCLSCDR NVHSANALSQ RHSRTLLCER CNSQPAVVRR  60
VEEKISLCKN CDSIGHAAGS MHKRQALSCY TGCPSAAELS TIWSFLLDGD STCQKGMGAM  120
SITDNQPRDN EDPQGKYNSQ DMSAAVEMSE LHTSSEKSTT LIESSLPALD NKQNKAELYA  180
GSKNYSSSKG CYSGMKGSTI YEDDPFAQDF NMDEVDLSFE NYEELFSGSL DNPNQFFENE  240
DINGLFGTKD MSVSGSSCQD ADAIEGSSIR RVMTMQPACS NAESADSLVS CKTEPSICFA  300
RQASILSFSN LGGESNAGDY QECGASTMLL MGEPPWYHPF PETSLPSTSR SNAVLRYKEK  360
KKIRKFDKHV RYASRKARAD VRRRVKGRFV KAGDAYDYDP LNETRSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603732.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
RefseqXP_016466834.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X2
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1S3ZRA00.0A0A1S3ZRA0_TOBAC; zinc finger protein CONSTANS-LIKE 9-like isoform X2
STRINGXP_009603731.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-114CONSTANS-like 9