PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603844.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28311.9 Da    PI: 8.327
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603844.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.69.2e-30959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+ey++
  XP_009603844.1  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYAT 59
                    79***********************************************86 PP
2K-box103.92.1e-348617511100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++   s++ e+akLk+++e Lqr+qRh++GedL+sLs keLq+Le+qL+++lk+iRs Kn+l++e+i+elqkk k+lqe+n++L kk++e
  XP_009603844.1  86 HSCPGSWTLEHAKLKARLEVLQRNQRHYMGEDLDSLSTKELQNLEHQLDSALKHIRSSKNQLMHESISELQKKDKALQEQNNQLCKKVKE 175
                     5556789********************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.226161IPR002100Transcription factor, MADS-box
CDDcd002652.86E-41279No hitNo description
SuperFamilySSF554555.62E-33282IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-31323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.6E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-313859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129716.86289179IPR002487Transcription factor, K-box
PfamPF014863.9E-2990173IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYATD  60
SCMERILERY ERYSYAERQL VATTDHSCPG SWTLEHAKLK ARLEVLQRNQ RHYMGEDLDS  120
LSTKELQNLE HQLDSALKHI RSSKNQLMHE SISELQKKDK ALQEQNNQLC KKVKEREKEL  180
AQQNQREQQN QELNSPSFIF QQQLDSPNLG EAYQSTAEEN GEVEGGSQQQ TANTVMPPWM  240
IRHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P6e-22174173Myocyte-specific enhancer factor 2B
1tqe_Q6e-22174173Myocyte-specific enhancer factor 2B
1tqe_R6e-22174173Myocyte-specific enhancer factor 2B
1tqe_S6e-22174173Myocyte-specific enhancer factor 2B
6c9l_A6e-22174173Myocyte-specific enhancer factor 2B
6c9l_B6e-22174173Myocyte-specific enhancer factor 2B
6c9l_C6e-22174173Myocyte-specific enhancer factor 2B
6c9l_D6e-22174173Myocyte-specific enhancer factor 2B
6c9l_E6e-22174173Myocyte-specific enhancer factor 2B
6c9l_F6e-22174173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ5342020.0DQ534202.1 Nicotiana tabacum fruitfull-like MADS-box protein (FUL) mRNA, complete cds.
GenBankJQ6869290.0JQ686929.1 Nicotiana tabacum cultivar SR1 fruitfull (FUL) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603844.10.0PREDICTED: agamous-like MADS-box protein AGL8 homolog
RefseqXP_016448958.10.0PREDICTED: agamous-like MADS-box protein AGL8 homolog
SwissprotQ424291e-148AGL8_SOLTU; Agamous-like MADS-box protein AGL8 homolog
TrEMBLA0A1S3YAB90.0A0A1S3YAB9_TOBAC; agamous-like MADS-box protein AGL8 homolog
STRINGXP_009603844.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-103AGAMOUS-like 8
Publications ? help Back to Top
  1. Kang SG,Hannapel DJ
    Nucleotide sequences of novel potato (Solanum tuberosum L.) MADS-box cDNAs and their expression in vegetative organs.
    Gene, 1995. 166(2): p. 329-30
    [PMID:8543185]