PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009603907.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 456aa    MW: 50584.7 Da    PI: 6.2066
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009603907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-05122142323
                     ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                     C+ Cgk Fs+   L  H+rtH
  XP_009603907.1 122 CKECGKEFSSTQALAGHLRTH 142
                     ********************9 PP
2zf-C2H215.16.6e-05153175123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++Cgk F +   L  H+++H
  XP_009603907.1 153 HICEKCGKGFGSTRALYGHMKVH 175
                     68*******************99 PP
3zf-C2H210.70.0017379401123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kCp+C k F++  +L  H r H
  XP_009603907.1 379 HKCPICFKIFPSGQSLGGHKRAH 401
                     79**************9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.099931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.801120147IPR007087Zinc finger, C2H2
SMARTSM003550.09120142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.67E-11121175No hitNo description
PfamPF139122.3E-7122144IPR007087Zinc finger, C2H2
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-5122144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.2E-4148175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.115153180IPR007087Zinc finger, C2H2
PfamPF139120.004153175IPR007087Zinc finger, C2H2
SMARTSM003550.0042153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
SuperFamilySSF576677.97E-5376403No hitNo description
PROSITE profilePS501578.974379401IPR007087Zinc finger, C2H2
PfamPF139124.3E-9379402IPR007087Zinc finger, C2H2
SMARTSM003550.25379401IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280381401IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MEETPEQKHK CRFCNLSCSS GRSLGGHMRV HLDLISAEKK QKIKAENKMG FAEEEEEADN  60
HFENLSISEQ SDSSMSQEKA NNISTNDVDD IDSIGYGLRE NPRKSWRVSE LKLSSLKTKN  120
LCKECGKEFS STQALAGHLR THSKKGTTTE KSHICEKCGK GFGSTRALYG HMKVHVKRSR  180
VDQESESSKQ SLSDFETVCP IRKKRSKIKY QIDANPSSSS AVSEVEEMEE AAKTLMMLSC  240
GVRDWDEYIS ISKPLKNENV ISANAFTGKN LSQAGCSDSG CVDGYEKKCE NEAINDEFSG  300
KLMMINTEIT RACYSTTMLG LDNDPSEDLA FLNSCSLKNA GVDFQVLNPE TTFVSDIPVE  360
LGTIEAMRTS PEPIKSKDHK CPICFKIFPS GQSLGGHKRA HYTGFSESKT KETMVKKLED  420
LADNHRSFDL NNPVNAVDGG EKDVVELNLW WVGGSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603907.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S3YKY60.0A0A1S3YKY6_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009603907.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-11C2H2-like zinc finger protein