PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604000.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SRS

Protein Properties

Length: 483aa MW: 51039.9 Da PI: 8.3703

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604000.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	215.6	1.1e-66	270	434	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++++s+t++s++ XP_009604000.1 270 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVNSQATTTASHTSTSNT 364 5689*******************************************98766655544332233447788899999999********** PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++tss lP +v+++avf+cvrv+svddge+e+aYq++v igGhvfkG+LydqG+ee XP_009604000.1 365 TTPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGEDEFAYQAVVRIGGHVFKGFLYDQGIEE 434 ****999******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-62	271	433	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.4E-26	273	315	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.6E-28	385	432	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MAEAPSHEKE TQLLKEQRGS LHQRLMIFQG FATSTAYFSC YCFCWVKDKK DSRRRNLLKS 60 AAVATARRLL QASDSGAFAD WVANSSNSAT GVAAIGDLSL GFNAGTTIGS GGGNGPHTAA 120 GGGGGGGHSG IWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHHQNS HQENSINFDP 180 INGSNISTSH ATNTSLGVGV IPLLTATPLT NMVSFDDQDL VSRNRGNDTE GGGFQFFSNQ 240 QPQNSYTKNS NVLGSGNGNN NIVGSVSSTS SATCQDCGNQ AKKDCPHRRC RTCCKSRGFD 300 CTTHVKSTWV PAARRRERQL IGGTSTNVNV AAGSSSQSTS SAKKPRLVNS QATTTASHTS 360 TSNTTTPRSF DTSSSHQDAS FKASLPGQVR APAVFKCVRV TSVDDGEDEF AYQAVVRIGG 420 HVFKGFLYDQ GIEEGKDNNN FPNLSDLHLG GSGNITNETS DLYAASTGGG GLLGGSNYGN 480 QIN

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MAEAPSHEKE TQLLKEQRGS LHQRLMIFQG FATSTAYFSC YCFCWVKDKK DSRRRNLLKS  60
AAVATARRLL QASDSGAFAD WVANSSNSAT GVAAIGDLSL GFNAGTTIGS GGGNGPHTAA  120
GGGGGGGHSG IWSASSSRQM QINYGLSPEM GMFVVHPASF HHHHHHHQNS HQENSINFDP  180
INGSNISTSH ATNTSLGVGV IPLLTATPLT NMVSFDDQDL VSRNRGNDTE GGGFQFFSNQ  240
QPQNSYTKNS NVLGSGNGNN NIVGSVSSTS SATCQDCGNQ AKKDCPHRRC RTCCKSRGFD  300
CTTHVKSTWV PAARRRERQL IGGTSTNVNV AAGSSSQSTS SAKKPRLVNS QATTTASHTS  360
TSNTTTPRSF DTSSSHQDAS FKASLPGQVR APAVFKCVRV TSVDDGEDEF AYQAVVRIGG  420
HVFKGFLYDQ GIEEGKDNNN FPNLSDLHLG GSGNITNETS DLYAASTGGG GLLGGSNYGN  480
QIN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016452902.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_018627176.1	0.0	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1
Swissprot	Q94CK9	6e-77	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A1S3YLN0	0.0	A0A1S3YLN0_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like
STRING	XP_009604000.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7655	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	7e-73	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]