PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009604120.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 324aa MW: 36598.3 Da PI: 7.9333

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009604120.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.6	2.4e-16	23	103	2	74
trihelix 2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt qe+++Liea++ ++er +r++ + +W++v +++++ + rs++qC++kw+nl +++kk++e e++++++ XP_009604120.1 23 WTVQETMVLIEAKKMDDERRNRRQgdinergkPTELRWKWVEDYCWRNSCLRSQNQCNDKWDNLMRDFKKVREYERREAKK 103 ************999999975333334433999**************************************997544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.097	15	87	IPR017877	Myb-like domain
Pfam	PF13837	5.4E-12	22	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 324 aa Download sequence Send to blast
MDNILVGDQG GSSMLRDYRK GNWTVQETMV LIEAKKMDDE RRNRRQGDIN ERGKPTELRW 60 KWVEDYCWRN SCLRSQNQCN DKWDNLMRDF KKVREYERRE AKKAAEVGEE ITSYWKIEKN 120 ERKEKSLPTN MLPEIYEALV EIVDRKGQKM LPASLLPTLQ QQSTQPQITA LPLPPPPLPP 180 PTTAVVAQTA APQLSDVAYT GQYPFPTVDP DTSDLHSDSP AKKRRMSGEG TSSGTAKGNI 240 NNSSQEVGSA ISKSAVIIAE AIQSCEEREE KRHRELLSLH ERRLKIEESK AEINREGING 300 LVDSINKLAN SILALAGNKN QSAP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009604120.1	0.0	PREDICTED: trihelix transcription factor ASR3-like isoform X2
TrEMBL	A0A1S3XZW3	0.0	A0A1S3XZW3_TOBAC; uncharacterized protein LOC107770676
STRING	XP_009604113.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	4e-50	Trihelix family protein