PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604641.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 172aa    MW: 19495.5 Da    PI: 10.0205
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604641.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.000189111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg+ Fs    L  H+r+H
  XP_009604641.1  89 HECSICGMEFSLGQALGGHMRRH 111
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355914769IPR015880Zinc finger, C2H2-like
PfamPF139125.8E-94771IPR007087Zinc finger, C2H2
SuperFamilySSF576672.09E-747111No hitNo description
Gene3DG3DSA:3.30.160.603.3E-486112IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.06789111IPR015880Zinc finger, C2H2-like
PfamPF139121.2E-989114IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.11889116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MNAMKRSREE DRQVEAEAMA NCALMLLSRL NNNNNTTSTD RDYHNDFECK TCNKRFPSFQ  60
ALGGQRASHK RPRLLARDFL VQSKKNKMHE CSICGMEFSL GQALGGHMRR HRDEINNTSA  120
AAGKTMIPVL KKSNSSKRIF CGLDLNLTPD VDVELKLWPT ALVLSPVLRI FI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604641.11e-127PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A1S4B2I41e-118A0A1S4B2I4_TOBAC; zinc finger protein ZAT12-like
STRINGXP_009604641.11e-126(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-34C2H2 family protein