PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604803.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 308aa    MW: 35246.5 Da    PI: 4.8222
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604803.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1996149356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k++++t++q++ Le+ Fe ++++  e++ +LAk+lgL+ rq+ +WFqNrRa+++
  XP_009604803.1  96 KKRRLTADQVQFLEKSFEVENKLEPERKDQLAKELGLQPRQIVIWFQNRRARWR 149
                     56789************************************************9 PP
2HD-ZIP_I/II126.21.5e-4095186192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrl+++qv++LE+sFe e+kLeperK +la+eLglqprq+ +WFqnrRAR++tkqlEkdyeaL+++yd+lk++  +L ke+++Lr+++ 
  XP_009604803.1  95 EKKRRLTADQVQFLEKSFEVENKLEPERKDQLAKELGLQPRQIVIWFQNRRARWRTKQLEKDYEALRNKYDNLKADYINLLKEKDDLRAQVI 186
                     69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.65391151IPR001356Homeobox domain
SMARTSM003891.5E-1994155IPR001356Homeobox domain
SuperFamilySSF466891.75E-1994162IPR009057Homeodomain-like
PfamPF000461.4E-1696149IPR001356Homeobox domain
CDDcd000861.03E-1796152No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2097158IPR009057Homeodomain-like
PRINTSPR000311.3E-5122131IPR000047Helix-turn-helix motif
PRINTSPR000311.3E-5131147IPR000047Helix-turn-helix motif
PfamPF021835.4E-12151192IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAGRGLFYGD AAGFNGTLLQ KQRLMSSSSS SFATKEAVGS LLVPGYSPSF LASGSMFSFR  60
GVNGGNKSDR SFFQSFDQVE ENETDDLEEY LHQPEKKRRL TADQVQFLEK SFEVENKLEP  120
ERKDQLAKEL GLQPRQIVIW FQNRRARWRT KQLEKDYEAL RNKYDNLKAD YINLLKEKDD  180
LRAQVIQFTD KLLLKEKEKG ELATCDIKEL SPKENMIDPV LEDEMSKVSA ITLKQHKDLN  240
SVKSDVFDSE SLVQSSILDQ SDLSQDEEEN LSKNLVAKVV HDHYPMTSSN LSCFGYLVED  300
QGFGFWSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604803.10.0PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X2
TrEMBLA0A314KNV71e-178A0A314KNV7_NICAT; Homeobox-leucine zipper protein hat5
STRINGXP_009604802.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-41homeobox 1