PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009604991.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 252aa    MW: 28160.9 Da    PI: 9.0054
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009604991.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.13.1e-1377139256
                     T--SS--HHHHHHHHHHHHHSSS--........HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknryps........aeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq   Lee F+++++++        ++++  LAk+l+L  rqV vWFqNrRa+ k
  XP_009604991.1  77 RKKLRLTKEQSAFLEESFKEHNTLNpeknfnilQKQKLALAKQLNLRPRQVEVWFQNRRARTK 139
                     788899*************7666651111111156788899********************98 PP
2HD-ZIP_I/II111.75e-3677175192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLepe........rKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                     +kk+rl+keq+++LEesF+e+++L+pe        +K +la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr++++l+een+rL+ke +eL
  XP_009604991.1  77 RKKLRLTKEQSAFLEESFKEHNTLNPEknfnilqkQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCCEKLTEENRRLQKELQEL 171
                     69***********************963333333368999******************************************************* PP

     HD-ZIP_I/II  88 reelk 92 
                     r +lk
  XP_009604991.1 172 R-ALK 175
                     9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007114.98173141IPR001356Homeobox domain
SMARTSM003894.4E-1175145IPR001356Homeobox domain
PfamPF000469.4E-1177139IPR001356Homeobox domain
CDDcd000863.50E-1277142No hitNo description
Gene3DG3DSA:1.10.10.604.4E-1477144IPR009057Homeodomain-like
SuperFamilySSF466891.54E-1377150IPR009057Homeodomain-like
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PfamPF021837.8E-10141175IPR003106Leucine zipper, homeobox-associated
SMARTSM003402.1E-24141184IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVLDMNRRPI ILAEEAEEGT DLSSPNSNSA VSSFQMEFSS IYRSGISRSL IGKRDHFEAG  60
NTERGVSDED ENNGLARKKL RLTKEQSAFL EESFKEHNTL NPEKNFNILQ KQKLALAKQL  120
NLRPRQVEVW FQNRRARTKL KQTELDCEYL KRCCEKLTEE NRRLQKELQE LRALKSSQPF  180
YMQLPATTLT MCPSCERVAT TAATAVPTAA AATTTSATAT ANAAATNTTL SLAKPNLFPF  240
PPAQIHPPQA AS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009604991.10.0PREDICTED: homeobox-leucine zipper protein HOX27-like isoform X4
SwissprotP466659e-77HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZAY90.0A0A1S3ZAY9_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X2
TrEMBLA0A1S3ZB980.0A0A1S3ZB98_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X1
STRINGXP_009604988.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-64homeobox from Arabidopsis thaliana