PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605094.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 95aa    MW: 10532.3 Da    PI: 10.6135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605094.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000193857120
                    EEETTTTEEESSHHHHHHHH CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHi 20
                    ++C+ C+k F +   L rH 
  XP_009605094.1 38 FECKTCKKQFDSLQALGRHR 57
                    89****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.8E-43458IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139125.6E-83858IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MALKRSREEE SVLSVEKLVM ANCVDIMKRN QSLGRKKFEC KTCKKQFDSL QALGRHRAIV  60
IGPNLAKISG PRVPDPPSFQ APTGDAKMAS FWLSG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605094.12e-65PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A1S4BT016e-24A0A1S4BT01_TOBAC; zinc finger protein ZAT12-like
TrEMBLA0A1U7YER26e-24A0A1U7YER2_NICSY; zinc finger protein ZAT12-like
STRINGXP_009605094.19e-65(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.16e-07C2H2 family protein