PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009605655.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 178aa MW: 20687.7 Da PI: 10.9412

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009605655.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.2	1.8e-20	12	97	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C ++++ + ++++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ XP_009605655.1 12 YYDEYAGRAGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRSG---SIANQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 97 8*******************************7555555544...4588999999****************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-18	12	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MIFESEEAAR AYYDEYAGRA GFITRVLSSR KSERDGSIIS RGLGCRGIPD NQRSGSIANQ 60 KRDRRRDGCT AMILVKREKP GTWVVRKFVR DHNHPLVISP SKRRPTFDEK DKKIQELTAE 120 LRIKKRLSAA YREQLLSLMK DVDSHSEHMS TKVQAVRRIL KELETKKQEL SNRSRHHK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	1e-130	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605654.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
Refseq	XP_018627619.1	1e-129	PREDICTED: protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A1S4AQE7	1e-126	A0A1S4AQE7_TOBAC; protein FAR1-RELATED SEQUENCE 2-like
STRING	XP_009605654.1	1e-128	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	9e-45	FAR1 family protein