PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009605702.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 222aa    MW: 25146.4 Da    PI: 7.4372
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009605702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.54.7e-202068149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i+n+  r+vtfskRr g++KKA+EL+ L +ae+ +++ s +++l+++
  XP_009605702.1 20 KPIDNQNSRHVTFSKRRLGLFKKASELCMLSGAEIVILVQSLKQRLFTF 68
                    68**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.9881272IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-251271IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-231384IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-151434IPR002100Transcription factor, MADS-box
PfamPF003191.6E-182268IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-153449IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-154970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MNTTTKTVKK TQGRRKIEIK PIDNQNSRHV TFSKRRLGLF KKASELCMLS GAEIVILVQS  60
LKQRLFTFGH PNADAIIDRY LTGKSSSSSS TVDQLNVQQN NQYYSQICRE LEAEKKKKEI  120
IENSKIVNNN NEGFWWNEPI DDMGIEELEE SMGALEELKK KITMRADELS MINGSSVVPT  180
TSTVNNNIAR FGAEDQFLNQ AAIDYCSSIV PYQFNHPGDG QF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605702.11e-166PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1J6L6Y01e-138A0A1J6L6Y0_NICAT; Agamous-like mads-box protein agl62
STRINGXP_009605702.11e-165(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21342252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-28AGAMOUS-like 62