PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606111.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 197aa MW: 21491.3 Da PI: 6.4872

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606111.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	96.9	2.1e-30	2	104	1	98
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlrr+C+++C+l+ ++ p +q++++ +v k+FG+s ++ +++a+pe++r+++++sl++eA+ r+ +Pv Gavg++++++++++q+ XP_009606111.1 2 SCNGCRVLRRRCSDNCTLRACLdgiddPRAQANATLFVSKFFGRSDLMAFIAAVPENRRPALFKSLLFEACGRTVNPVTGAVGLLSTGNWHVCQK 96 6******************************************************************************************** PP DUF260 91 kaelallk 98 ++e++l++ XP_009606111.1 97 AVETVLVG 104 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.098	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.7E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MSCNGCRVLR RRCSDNCTLR ACLDGIDDPR AQANATLFVS KFFGRSDLMA FIAAVPENRR 60 PALFKSLLFE ACGRTVNPVT GAVGLLSTGN WHVCQKAVET VLVGGNLRPV FAGILTPYMN 120 ETFESFRCGG AWDIPNQFSN KSGSFTDGSD HIDTTEWVGL EKRWNTTSSI GSETELSDVS 180 LGLDSGNKEP KLLNLFV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606111.1	1e-144	PREDICTED: LOB domain-containing protein 38-like isoform X1
Refseq	XP_016477503.1	1e-144	PREDICTED: LOB domain-containing protein 38-like isoform X1
Swissprot	Q9SN23	2e-53	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	A0A1S4AM47	1e-143	A0A1S4AM47_TOBAC; LOB domain-containing protein 38-like isoform X1
STRING	XP_009606111.1	1e-144	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA966	24	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-56	LOB domain-containing protein 38