PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606499.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 671aa    MW: 73683.8 Da    PI: 9.3306
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606499.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.4e-07572621147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     ++Rt  ++k++w ++
   XP_009606499.1 572 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaNHRTYVDLKDKWKTL 621
                      6789999*******************9888878999***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.78E-9379469IPR029071Ubiquitin-related domain
PROSITE profilePS5129416.38567626IPR017930Myb domain
SMARTSM007171.9E-7571624IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-10572622IPR009057Homeodomain-like
SuperFamilySSF466897.86E-16573654IPR009057Homeodomain-like
CDDcd116609.02E-18573623No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 671 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPPIP RATRSARRRG TIRRKADGDG TCPFDLLATV AGKLLGEGAS  60
SPDSTGSVRG KEQSILKDEK IKEKSYAEGC YERGFFISEL VSQAPVVNRS LSELPHAQND  120
TISGPASVTM SSDCSEKFPF AKQFVNGESR EEEHGVFSSC TLDTESDKQI KIELSNNAKV  180
STSKGAAISS PEFPDVWDKK PSTLLVTSDD SVRLSLSPYT APCRSFPVIR NDVKLDNRDD  240
DENSGCTQPS TPNKASGSAP RVRDRPIKKL LASKYWEENL KSDNEGHANT GGKTMHAYHN  300
RNSAYKHQRS QRDFPFKKRK LFKCGSFSNS DGEMSTDGIC SSPTSDLHGN ASYYSKASSG  360
GGAAAGTSVF NGGRASFKPS DSCVKFRIKS FRVPEFFVEI PENATVGSLK RTVMEAVTAI  420
LGGGLRIGVV FQGKKVRDDN KTLLQTGISH DYELDALGFS LEPNPIQASP PLGPDWRSCV  480
LPCDTPQPLT RCLSPAITGI HQGRSDDHTG TSLNNFVESD RDSAPSPHYA ALEKISANSR  540
ALVPVTAVNA EALAVVPLLK PKRSEATQRR IRRPFSVAEV EALVQAVEKL GTGRWRDVKL  600
RAFDNANHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE LLDRVLTAHA YWSQQQAKQQ  660
MKQPSETYLL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-565606625107Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310319QRDFPFKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-126HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606499.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
RefseqXP_009606500.10.0PREDICTED: telomere repeat-binding protein 5-like isoform X1
TrEMBLA0A1J6ICI30.0A0A1J6ICI3_NICAT; Telomere repeat-binding protein 5
STRINGXP_009606499.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-126TRF-like 2