PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606532.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 823aa    MW: 89550.7 Da    PI: 6.6092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606532.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-20128183156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++k +++t++q++eLe++F++n++p++++r eL k+l L+ rqVk+WFqNrR+++k
  XP_009606532.1 128 KKKYHRHTPYQIQELEAAFKENPHPDEKARLELGKRLTLESRQVKFWFQNRRTQMK 183
                     79999************************************************999 PP
2START1632.2e-513365601206
                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     ela +a++el+k+a+ ++p+W++      e +n +e+ ++f++  +     +++ea +a+g v  ++  lve+l+d++ +W e++     + +t+
  XP_009606532.1 336 ELAFAAMNELLKLAEIGDPLWFRNFdgsgEALNLEEYARSFPPCIGmkpsnFTTEATKATGTVMINSLVLVETLMDTS-RWVEMFScivgRTSTI 429
                     57899******************9999999*************99999**9***************************.**************** PP

                     EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS
           START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170
                     +viss       g lql++ae+q+ls lv  R + f+R+++q+ +g+w++vdvS+d  q+ ++  +   +++lpSg+++++++ng+skv+w+eh+
  XP_009606532.1 430 DVISSSasgsrnGNLQLIQAEFQVLSALVFvRQVKFLRFCKQHAEGVWAVVDVSIDTIQEGSQPREAGNCRRLPSGCIVQDLPNGYSKVIWIEHM 524
                     *****999*****************************************************998899999************************* PP

                     E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++h+l+r++++sg+ +ga++w atlqrqce+
  XP_009606532.1 525 EYDENTIHNLYRPFIRSGRGFGAQRWIATLQRQCEC 560
                     **********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-22102187IPR009057Homeodomain-like
SuperFamilySSF466895.99E-20111185IPR009057Homeodomain-like
PROSITE profilePS5007117.734125185IPR001356Homeobox domain
SMARTSM003892.5E-16127189IPR001356Homeobox domain
CDDcd000861.51E-17128185No hitNo description
PfamPF000466.6E-18128183IPR001356Homeobox domain
PROSITE profilePS5084838.472327563IPR002913START domain
SuperFamilySSF559613.85E-28328560No hitNo description
CDDcd088752.24E-109331559No hitNo description
PfamPF018521.5E-44336560IPR002913START domain
SMARTSM002342.5E-35336560IPR002913START domain
SuperFamilySSF559614.81E-13606816No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 823 aa     Download sequence    Send to blast
MSFGGFIGSS SSGGNGGGDG GSGVSRVVAD SPYNNTMPTA ATIAHQSQQL VTSPLTQPMF  60
NSSPLSLALK PKMEGLGDMG MIGENFDAVA MGRSSREDEY ESRSGSDNLD GGASGDDLDA  120
PLGKSSRKKK YHRHTPYQIQ ELEAAFKENP HPDEKARLEL GKRLTLESRQ VKFWFQNRRT  180
QMKTQLERHE NALLKQEYDK LRIENIAMKE AMRSPMCGHC GGQAILGEIH IEEHHLRIEN  240
ARLRDELNRI CVLANKFLGR PLGSFPGAMP PGMANSGLEL AVGRNGFGAM NSADTALPMG  300
LDFGNGLSSP LTMMSPRPTP SMSSTDVSFD KSMLMELAFA AMNELLKLAE IGDPLWFRNF  360
DGSGEALNLE EYARSFPPCI GMKPSNFTTE ATKATGTVMI NSLVLVETLM DTSRWVEMFS  420
CIVGRTSTID VISSSASGSR NGNLQLIQAE FQVLSALVFV RQVKFLRFCK QHAEGVWAVV  480
DVSIDTIQEG SQPREAGNCR RLPSGCIVQD LPNGYSKVIW IEHMEYDENT IHNLYRPFIR  540
SGRGFGAQRW IATLQRQCEC LAVITSSAVP SGDSAAVISP SGRRSIAMLA RRITRNFCGG  600
VCATFYKWEP IQTGTAEDTK LMMRKSIGDP GEPPGIVLSA TRTIWLPVTH QRLFDFLRNE  660
QTRSQWDVLS HGGPMHQIVH IAKGQDLGNS ISLFRANAAS RDANQNSMLI LQDSCTDVSG  720
SIVAYAAVDT AEMNVVMSGG DSSCVAFLPS GFAIVPDCFQ NSNNGMLEKE DNGGSSNGSL  780
LTLGFQILVN SLPAAKLTME SVNTVNALIS RTLQGIKTAF QCN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606532.10.0PREDICTED: homeobox-leucine zipper protein HDG1-like isoform X1
SwissprotQ9M2E80.0HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBLA0A1S3YYP10.0A0A1S3YYP1_TOBAC; homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
STRINGXP_009606532.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16262465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]