PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606770.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 548aa    MW: 61258.6 Da    PI: 6.5547
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606770.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like81.41e-25190243155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     kpr++Wt +LH++Fv+av+q+ G +kA Pk+il+lm v+ Lt+e+v+SHLQkYRl
  XP_009606770.1 190 KPRVVWTVDLHQKFVKAVNQI-GFHKAGPKKILDLMAVPWLTRENVASHLQKYRL 243
                     79*******************.9*******************************8 PP
2Response_reg79.51.1e-26251341109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH...ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd...pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++   +++++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ 
  XP_009606770.1  25 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAQEALNLLRERKdhgFEIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKGVQH 117
                     89*********************.***************8888889**********************6644.8********************* PP

                     TESEEEESS--HHHHHH CS
    Response_reg  93 GakdflsKpfdpeelvk 109
                     Ga d+l Kp+ ++el++
  XP_009606770.1 118 GACDYLLKPIRMKELRN 134
                     **************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.4E-4422160No hitNo description
SuperFamilySSF521721.39E-3522148IPR011006CheY-like superfamily
SMARTSM004481.8E-3123136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.1724140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2325135IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.41E-3026140No hitNo description
PROSITE profilePS512949.084187246IPR017930Myb domain
SuperFamilySSF466891.74E-17188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-28188248IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-22190243IPR006447Myb domain, plants
PfamPF002498.7E-7192242IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MMENSKSSAG FSSPRSDNFP AGLRVLVVDD DPTWLKILEK MLKKCSYEVT TCGLAQEALN  60
LLRERKDHGF EIVISDVNMP DMDGFKLLEH VGLEMDLPVI MMSVDGETSR VMKGVQHGAC  120
DYLLKPIRMK ELRNIWQHVL RKRMHEARDI GNHEMDLFDQ LWMFNGTDSG NKRKDFDDKE  180
ISVHSSSMKK PRVVWTVDLH QKFVKAVNQI GFHKAGPKKI LDLMAVPWLT RENVASHLQK  240
YRLYLTRLQK GGMKHPNVSS KENSLQNPVD VCADVTNDKC SKAIAQNCKS NIYESKVKGV  300
VSIPVAEPGS VVGDNFDSHT AGSKTSLSGL INTDVKSVDV PTPYCFTGEA PQPQYKQDFK  360
PRFPSENQPL PGIPHQIQVD CTQPTCSLNL VPSHEMREWD RLSGKENKLS SFFKSTSGVG  420
KLSALEAIQP VSHQINFHSL EQIPSTWSMT SQNVDQNLVN GLQSSTGNVT LGSGSVVASL  480
AEDMCDTSIQ GECFPAYNGL RNIQQFHYNE PQPISGVSTC LYDTLRFDYE YPNDSLEGIV  540
LDQGLFIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-18186248163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-82HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606770.10.0PREDICTED: two-component response regulator ORR26 isoform X1
RefseqXP_016469917.10.0PREDICTED: two-component response regulator ORR26-like
TrEMBLA0A1S3ZZP40.0A0A1S3ZZP4_TOBAC; Two-component response regulator
STRINGXP_009606770.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67882433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-116response regulator 11