PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009606887.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 259aa    MW: 29416.1 Da    PI: 7.7704
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009606887.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.91.6e-19191225135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg+ kTp+WR gp g+ktLCnaCG++y++ +l
  XP_009606887.1 191 CQHCGVDKTPQWRAGPMGPKTLCNACGVRYKSGRL 225
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.057185221IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-18185239IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-15187248No hitNo description
Gene3DG3DSA:3.30.50.105.8E-15188223IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.88E-16190238No hitNo description
PROSITE patternPS003440191216IPR000679Zinc finger, GATA-type
PfamPF003202.3E-17191225IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MNMIEDLDST ACFMVDDDIL NFSLDEEKHP SISSSSFSSL DSSNNISFLP DDHSRSFHES  60
VEEELEWLSN KDAFPAVEFD IFSENIPNVI FDHHSPVSVL ENSSSSSANN NSCNLNDKEN  120
AFMIGCSSLQ VPVNYPVRAR GKRRRRISFA DLTNERCVWG RKLKFKNNKQ EWELLSLPMT  180
KARRASIGRR CQHCGVDKTP QWRAGPMGPK TLCNACGVRY KSGRLLPEYR PANSPTFSAD  240
LHSNSHRKVL EMRKQRIGI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146KRRRRI
2142163RRRRISFADLTNERCVWGRKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754442e-83HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009606887.10.0PREDICTED: GATA transcription factor 1-like isoform X2
TrEMBLA0A314KZW51e-161A0A314KZW5_NICAT; Gata transcription factor 1
STRINGXP_009606886.11e-160(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-45GATA transcription factor 1