PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009606984.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 153aa MW: 17284.2 Da PI: 5.0563

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009606984.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.2	3e-05	27	49	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ Fs+ L H++ H XP_009606984.1 27 YRCSFCNRGFSNAQALGGHMNIH 49 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.57E-7	24	53	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-5	24	53	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.0025	27	49	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.78	27	54	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	29	49	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MGSDLNSSNF EITWKSDELG LSQAKFYRCS FCNRGFSNAQ ALGGHMNIHR KDRAKLREVP 60 SEISSDDTSS PSKRPCEEHH HYHPISKAKD NDELIIRGDI LQLPLFVDFP SKEVINCVET 120 QEGNKGMQLS DDSELDLELR LGPEPPESSM KSY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009606984.1	1e-111	PREDICTED: transcriptional regulator TAC1-like
Refseq	XP_016480947.1	1e-111	PREDICTED: transcriptional regulator TAC1-like
TrEMBL	A0A1S4AWE5	1e-110	A0A1S4AWE5_TOBAC; transcriptional regulator TAC1-like
STRING	XP_009606984.1	1e-111	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7463	16	26

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	3e-17	C2H2 family protein