PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009607228.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 137aa MW: 15775.9 Da PI: 10.5981

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009607228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	133.4	2.8e-41	29	106	95	170
YABBY 95 svssekl.senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ ++++ +++ + pr ++rPPekrqrvPsayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl XP_009607228.1 29 SKCNSRMaVRSSLTKNPREETiANRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 106 22222231344455556655558*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.9E-41	13	106	IPR006780	YABBY protein
SuperFamily	SSF47095	2.88E-8	46	99	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	60	98	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MWTVNMAAAF SQVSNYTSPE YKIDFGSSSK CNSRMAVRSS LTKNPREETI ANRPPEKRQR 60 VPSAYNQFIK EEIQRIKANN PDITHREAFS TAAKNWAHFP HIHFGLTLET KNQAKLENAE 120 KHIMHRAALP KIKTFTF

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607227.1	7e-99	PREDICTED: axial regulator YABBY 5-like
Refseq	XP_016489012.1	7e-99	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	1e-49	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A1S4BJP6	2e-97	A0A1S4BJP6_TOBAC; axial regulator YABBY 5-like
STRING	XP_009607227.1	3e-98	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-52	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]