PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009607761.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 373aa MW: 43716.4 Da PI: 10.1523

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009607761.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	7.5e-31	85	138	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+a+e+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ XP_009607761.1 85 PRLRWTPDLHLSFVRAIERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 138 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.8E-28	81	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.722	81	141	IPR017930	Myb domain
SuperFamily	SSF46689	4.48E-14	84	139	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-22	85	140	IPR006447	Myb domain, plants
Pfam	PF00249	1.2E-8	86	137	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MFLHQETLCS NVCLRLIASE KYMEKVSYSI DLNEEANNKR ETDETIELSD DMIEKTAEGN 60 SSSEDIGNYE NKSSRVRQYV RSKLPRLRWT PDLHLSFVRA IERLGGQERA TPKLVLQMMN 120 VRGLSIAHVK SHLQMYRSKK LGEFGQVLGH AHRAMQGKSY FCGNLSQRFN PLQDFKMKNG 180 AIVLARNFNN DDNVNHHFQN SLSRHRHETK EKFSRYLEWS SNQGTNNLFR MKILQTGNHE 240 IGPVRQSHFL EEKRWPPNEF KENQYWKKKR VSLSSIPSNK NSQSLFHQNN FVQQPMWRCR 300 YNSLEPKFET PFRPEMKRDK RLSKKDWLLP DFQLGVSTID NNKEKIHHSK KESDSTINTM 360 LSLSLPSYSS SAT

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MFLHQETLCS NVCLRLIASE KYMEKVSYSI DLNEEANNKR ETDETIELSD DMIEKTAEGN  60
SSSEDIGNYE NKSSRVRQYV RSKLPRLRWT PDLHLSFVRA IERLGGQERA TPKLVLQMMN  120
VRGLSIAHVK SHLQMYRSKK LGEFGQVLGH AHRAMQGKSY FCGNLSQRFN PLQDFKMKNG  180
AIVLARNFNN DDNVNHHFQN SLSRHRHETK EKFSRYLEWS SNQGTNNLFR MKILQTGNHE  240
IGPVRQSHFL EEKRWPPNEF KENQYWKKKR VSLSSIPSNK NSQSLFHQNN FVQQPMWRCR  300
YNSLEPKFET PFRPEMKRDK RLSKKDWLLP DFQLGVSTID NNKEKIHHSK KESDSTINTM  360
LSLSLPSYSS SAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	86	140	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-17	86	140	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	5e-36	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009607761.1	0.0	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
TrEMBL	A0A1J6K834	0.0	A0A1J6K834_NICAT; Putative myb family transcription factor
STRING	XP_009607761.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5516	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-39	G2-like family protein