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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | XP_009607938.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 252aa MW: 28551.4 Da PI: 4.5772 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 39.1 | 1.3e-12 | 106 | 153 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ h +Er+RR+++ + f L +l+P + kKl+K++iL ++eY+k+Lq
XP_009607938.1 106 QEHVTAERKRREKMGELFISLSKLVPGL-----KKLDKSSILGDTIEYMKELQ 153
67999***********************.....9******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 15.593 | 103 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.8E-10 | 106 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.0E-15 | 107 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 3.66E-15 | 107 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.67E-12 | 108 | 156 | No hit | No description |
| SMART | SM00353 | 2.7E-13 | 109 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 252 aa Download sequence Send to blast |
MEYTGNFNDE DDFFLDVMQN FSQDIYPSLT PYSYSNIDIE EKDQLKDLSS SPLKSSSGFL 60 ISFSSSQEEN IAIVKSHLEE INACQASGGN NNNNNIMYKR TPLQAQEHVT AERKRREKMG 120 ELFISLSKLV PGLKKLDKSS ILGDTIEYMK ELQQQENVNC IDDQVLGSKI KARILDKSVL 180 INIHCNKRDG VVGKVLFEME QLHLSVNDIR IMPFGRTYLE ISILAEMENG CCITVQDIVN 240 ALQINILDQV QS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 111 | 116 | ERKRRE |
| 2 | 112 | 117 | RKRREK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009607937.1 | 1e-166 | PREDICTED: transcription factor bHLH18-like | ||||
| Refseq | XP_016508733.1 | 1e-166 | PREDICTED: transcription factor bHLH18-like | ||||
| TrEMBL | A0A1S4D5W6 | 1e-164 | A0A1S4D5W6_TOBAC; transcription factor bHLH18-like | ||||
| STRING | XP_009607937.1 | 1e-165 | (Nicotiana tomentosiformis) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 2e-28 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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