PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608028.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 260aa    MW: 29513.5 Da    PI: 6.575
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608028.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.55.4e-23166224259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+++WrKYG K   gs+f +sYYrC    +Cp++++v++s++d + v++tY+g+H h+
  XP_009608028.1 166 ADQWRWRKYGMKRTGGSPFLKSYYRCNEVeNCPARRHVQQSSTDANKVVVTYRGQHIHH 224
                     59************************9988***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-23160226IPR003657WRKY domain
PROSITE profilePS5081123.927160226IPR003657WRKY domain
SuperFamilySSF1182905.89E-20164226IPR003657WRKY domain
SMARTSM007742.6E-23165225IPR003657WRKY domain
PfamPF031063.3E-19167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDENDWDLWA IVRSCSNVNR AIPDDDVRSC YNVNTTALID HSVDQDTSHG NSATNTKTPT  60
FFPEQSDCFG DFSDLFAAEN DHCFGLDEVC CLSKNVNTNS RIVPHNTENK TETIPNTPLV  120
VEHEEKKNKK ARCSMQLSRI EEGKVFSYRG KSTERYEILT DKLSEADQWR WRKYGMKRTG  180
GSPFLKSYYR CNEVENCPAR RHVQQSSTDA NKVVVTYRGQ HIHHPPNQHI AMVHTSQNAN  240
AAVQDPSFPS STSTSTSLFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-131672261674WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608028.10.0PREDICTED: probable WRKY transcription factor 50
TrEMBLA0A1S3ZBK00.0A0A1S3ZBK0_TOBAC; probable WRKY transcription factor 50
STRINGXP_009608028.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA110911323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24570.16e-17WRKY DNA-binding protein 17