PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608570.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 258aa    MW: 29193.3 Da    PI: 6.7784
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608570.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.83.1e-1980128355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  XP_009608570.1  80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 128
                     9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.35E-2279137IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-3279137IPR001471AP2/ERF domain
PROSITE profilePS5103223.80279136IPR001471AP2/ERF domain
SMARTSM003804.1E-3879142IPR001471AP2/ERF domain
PfamPF008476.7E-1280128IPR001471AP2/ERF domain
PRINTSPR003676.0E-128091IPR001471AP2/ERF domain
CDDcd000182.03E-3280137No hitNo description
PRINTSPR003676.0E-12102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0034059Biological Processresponse to anoxia
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MCGGAILADL IPRRDHRASS TDLWPNSADF WPSSSFTKTI NSRVSTQNVT ATPKRVQVAQ  60
PSTGNEQIQK TKKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD  120
KEARKIRGKK AKVNFPNEDD HYSTAYESYD TSYNHESNNC NGSFCSLENQ NTEPVMEYPL  180
AYKNSSGFVY NGSEEQKAEN EVEKLTEELM AYESLMKFYE IPYVDGQSVA ATLNPAAEAV  240
VGSGSMDLWS FDDVQQCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-22801381574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0011481e-155KJ001148.1 Nicotiana tabacum ethylene response factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608570.10.0PREDICTED: ethylene-responsive transcription factor ERF071 isoform X1
TrEMBLA0A1S4AGK00.0A0A1S4AGK0_TOBAC; ethylene-responsive transcription factor ERF071
STRINGXP_009608570.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.18e-47ERF family protein