PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608708.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 165aa    MW: 19163.1 Da    PI: 9.8862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608708.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-071752340
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                      W++e+   +++a +++G++ W+++a+ +   Rt++++
   XP_009608708.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52
                     5*****************99.********9.8999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-101162IPR009057Homeodomain-like
SMARTSM007177.1E-41462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-51758IPR009057Homeodomain-like
PfamPF002491.0E-61753IPR001005SANT/Myb domain
CDDcd001671.93E-51852No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM  60
AYLSLPEGTA SAVGLIALIS DHYCYLLWPR CRTRFRNSSN GSRAWCRRNH TPSVLGWSYQ  120
RVDGRPAVIV SFFFRTVIVR ASSRDYSHFF LCRPREGCCN EAPKC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608701.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X3
RefseqXP_009608703.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X3
RefseqXP_009608704.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X3
RefseqXP_009608705.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X3
RefseqXP_009608707.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X3
RefseqXP_016461650.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461651.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461652.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461653.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X2
RefseqXP_016461654.11e-122PREDICTED: protein ALWAYS EARLY 3-like isoform X2
SwissprotQ6A3322e-31ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBLA0A1S3ZBP41e-121A0A1S3ZBP4_TOBAC; protein ALWAYS EARLY 3-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.28e-34DNA binding
Publications ? help Back to Top
  1. Pfaff C, et al.
    ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development.
    Plant Physiol., 2018. 177(1): p. 226-240
    [PMID:29540591]