PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009608712.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 101aa MW: 11597.4 Da PI: 6.9545

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	17	52	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W++e+ +++a +++G++ W+++a+ + Rt++++ XP_009608712.1 17 HWSEEDLTHFYQAYRKYGKD-WEKVAAAVK-PRTAEMV 52 5***************99.******9.8999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.14E-11	11	62	IPR009057	Homeodomain-like
SMART	SM00717	7.1E-4	14	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-7	17	53	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-5	17	58	IPR009057	Homeodomain-like
CDD	cd00167	3.38E-6	18	52	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 101 aa Download sequence Send to blast
MKNSLRKRKA SDMIGPHWSE EDLTHFYQAY RKYGKDWEKV AAAVKPRTAE MVEALYIMHM 60 AYLSLPEGTA SAVGLIALIS DHYCYLDAVV SELRRIIDDV F

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461656.1	3e-70	PREDICTED: protein ALWAYS EARLY 3-like isoform X4
Refseq	XP_016461657.1	3e-70	PREDICTED: protein ALWAYS EARLY 3-like isoform X4
Swissprot	Q6A332	2e-32	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A1S3ZB57	6e-69	A0A1S3ZB57_TOBAC; protein ALWAYS EARLY 3-like isoform X4
STRING	XP_009797177.1	7e-48	(Nicotiana sylvestris)
STRING	XP_009595580.1	2e-42	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	7e-35	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]