PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009608937.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 124aa    MW: 13878.7 Da    PI: 6.3849
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009608937.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.69.7e-1060115149
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk...lelee....vikevd....iykvePwdLpk 49 
                     lp+G++F+P+d+e++ e+Lk+kv +++   +        +i+++d    i++++P++Lp 
  XP_009608937.1  60 LPAGVKFDPSDQEIL-EHLKAKVFSDThklH---PlineFIPTIDgengICYTHPEKLPG 115
                     799***********9.99****999994551...233333444434445*********93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-1054119IPR003441NAC domain
PROSITE profilePS5100511.20660124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MTWCNESNDQ ESLQLIKATS EEKSVIISKV DHQVRTITCP SCGHSIELQN QRGIHDLPGL  60
PAGVKFDPSD QEILEHLKAK VFSDTHKLHP LINEFIPTID GENGICYTHP EKLPGLNSNR  120
GLKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009608935.16e-81PREDICTED: NAC domain-containing protein 73-like
RefseqXP_009608936.16e-81PREDICTED: NAC domain-containing protein 73-like
SwissprotO494591e-44NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1J6I2D31e-67A0A1J6I2D3_NICAT; Nac domain-containing protein 73
STRINGXP_009608935.12e-80(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.16e-47NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]