PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009608942.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 356aa MW: 40289.4 Da PI: 4.7083

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009608942.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	69.3	5.5e-22	265	314	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+d + y +lpi+ AAk+L++c+Tv+K+ CR+ G+ RWP+Rkiks+ XP_009608942.1 265 GKLRLKDFAGYLHLPIEIAAKKLNICPTVMKKVCRRDGLLRWPYRKIKSI 314 68999*******************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.483	254	334	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-19	267	314	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MDYPTAIVPY HDPFDDSCSI GQISLFDENP TIGLPKSAWN QEPFTFDPTI LKSDNDFGVY 60 DPFDDPILLD IPYECNDYLV ENSTNTEAGV QDGVFENKSH VSVWPVSSST SMCTNNCQIL 120 REITHSNGLQ ISKLNIYGTL GRISHAVLEK YTSDFSSQSH ESPQIFDFSK DSTSSVKQFL 180 VQYFEACKLE GYILLQDPLC DFYEALGVGS DDGDILDIDS LLQLSPTISR DCQMNQQEMK 240 NESEANCNDM RHEKIPLSAQ RERTGKLRLK DFAGYLHLPI EIAAKKLNIC PTVMKKVCRR 300 DGLLRWPYRK IKSIKRKISK REKSLSSSDV EERASAKAEI AKLEEELAKN FEAFVS

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MDYPTAIVPY HDPFDDSCSI GQISLFDENP TIGLPKSAWN QEPFTFDPTI LKSDNDFGVY  60
DPFDDPILLD IPYECNDYLV ENSTNTEAGV QDGVFENKSH VSVWPVSSST SMCTNNCQIL  120
REITHSNGLQ ISKLNIYGTL GRISHAVLEK YTSDFSSQSH ESPQIFDFSK DSTSSVKQFL  180
VQYFEACKLE GYILLQDPLC DFYEALGVGS DDGDILDIDS LLQLSPTISR DCQMNQQEMK  240
NESEANCNDM RHEKIPLSAQ RERTGKLRLK DFAGYLHLPI EIAAKKLNIC PTVMKKVCRR  300
DGLLRWPYRK IKSIKRKISK REKSLSSSDV EERASAKAEI AKLEEELAKN FEAFVS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009608942.1	0.0	PREDICTED: uncharacterized protein LOC104102813
TrEMBL	A0A1J6J7N1	0.0	A0A1J6J7N1_NICAT; Uncharacterized protein
STRING	XP_009608942.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3505	20	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	3e-07	Nin-like family protein