PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609340.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27468.4 Da    PI: 10.0185
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609340.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.6e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n + rqvtfskRrng+lKKA+ELS+LCdaev +iifsst kly+++s
  XP_009609340.1 10 RIDNITSRQVTFSKRRNGLLKKAKELSILCDAEVGLIIFSSTAKLYDFAS 59
                    8***********************************************86 PP
2K-box78.71.5e-26831701198
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++ + +q e+a+L+++++ Lq+ +R+llGe+L++Ls+k+L  Le+qL+ sl++iR kK+++l+++i+el +k + + +en +L++k+
  XP_009609340.1  83 MSEVKFWQGEAANLRQQLHYLQERHRQLLGEKLSRLSIKDLTDLENQLDMSLRSIRMKKEQILTDEIKELNRKGNIILQENIELNEKV 170
                     57889********************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.469161IPR002100Transcription factor, MADS-box
CDDcd002652.89E-42278No hitNo description
SuperFamilySSF554552.22E-31281IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2585170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.97286176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MGRGKIAIRR IDNITSRQVT FSKRRNGLLK KAKELSILCD AEVGLIIFSS TAKLYDFAST  60
SMRSVIERYN KVMEEDHNLM NPMSEVKFWQ GEAANLRQQL HYLQERHRQL LGEKLSRLSI  120
KDLTDLENQL DMSLRSIRMK KEQILTDEIK ELNRKGNIIL QENIELNEKV NLVYQENIGL  180
QKKVYGTGGR NEANETPATH ATSNGYSFIN LQLSQPQGQR KDTSSNAMKL GLQLHYKAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-20174174MEF2C
5f28_B1e-20174174MEF2C
5f28_C1e-20174174MEF2C
5f28_D1e-20174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018628660.11e-176PREDICTED: MADS-box transcription factor 23-like
SwissprotQ6EP495e-92MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1S4B1R81e-149A0A1S4B1R8_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009609340.11e-176(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22630.13e-93AGAMOUS-like 17
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]