PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609384.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 355aa    MW: 38843.3 Da    PI: 4.7746
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609384.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.4e-16214250135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_009609384.1 214 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 250
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009791.6E-876111IPR010399Tify domain
PROSITE profilePS5132013.0876111IPR010399Tify domain
PfamPF062001.1E-980110IPR010399Tify domain
PfamPF062031.1E-14145186IPR010402CCT domain
PROSITE profilePS5101712.709145187IPR010402CCT domain
SMARTSM004014.9E-10208262IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12212261No hitNo description
Gene3DG3DSA:3.30.50.103.3E-15212254IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.41E-15213257No hitNo description
PfamPF003201.7E-13214249IPR000679Zinc finger, GATA-type
PROSITE patternPS003440214241IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQV CSSMPPLAAS  60
PVVDSDGRVL AAMPMPSRRT SELTISFEGQ LYVFPAVTPD KVQAILLFLG GSDMASYVPS  120
SHSLALQTTK SVDNDAPIRP NISRRIASLI RFREKRKERC FEKKVRYTCR KEVAQRMHRK  180
NGQFASLKDG EKTYAGNIDS GDSIPHHEPT LRRCQHCGIS ESETPAMRRG PSGPRTLCNA  240
CGLMWANKGM LRDITKGGRH VPFDKSEPRT PDIKLPTVAP ESSDQKQYQE DMREAAENFV  300
DNSPVGIGSS SADIDEEQDN LDELANASGT EFEIPASFDE QIGIDSHMGA DWPGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754408e-38HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609384.10.0PREDICTED: GATA transcription factor 19-like isoform X1
SwissprotQ5Z4U53e-56GAT20_ORYSJ; GATA transcription factor 20
TrEMBLA0A1S3X0100.0A0A1S3X010_TOBAC; GATA transcription factor 19-like isoform X1
STRINGXP_009609384.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-47ZIM-LIKE 2