PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009609387.1
Organism
Nicotiana tomentosiformis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 303aa    MW: 33337.9 Da    PI: 4.795
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009609387.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.23.5e-16162198135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_009609387.1 162 CQHCGISEseTPAMRRGPSGPRTLCNACGLMWANKGM 198
                     *****99999***********************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062038.7E-1593134IPR010402CCT domain
PROSITE profilePS5101712.70993135IPR010402CCT domain
SMARTSM004014.9E-10156210IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-12160209No hitNo description
Gene3DG3DSA:3.30.50.102.6E-15160202IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.74E-16161205No hitNo description
PfamPF003201.4E-13162197IPR000679Zinc finger, GATA-type
PROSITE patternPS003440162189IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEAANSRAIG FDEEYMNVAI RVDEYGGGGF DADDISGGCE SSGTEELQQV QAILLFLGGS  60
DMASYVPSSH SLALQTTKSV DNDAPIRPNI SRRIASLIRF REKRKERCFE KKVRYTCRKE  120
VAQRMHRKNG QFASLKDGEK TYAGNIDSGD SIPHHEPTLR RCQHCGISES ETPAMRRGPS  180
GPRTLCNACG LMWANKGMLR DITKGGRHVP FDKSEPRTPD IKLPTVAPES SDQKQYQEDM  240
REAAENFVDN SPVGIGSSSA DIDEEQDNLD ELANASGTEF EIPASFDEQI GIDSHMGADW  300
PGT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754406e-38HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609387.10.0PREDICTED: GATA transcription factor 17-like isoform X4
SwissprotB8AR302e-46GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A1S3WZR20.0A0A1S3WZR2_TOBAC; GATA transcription factor 19-like isoform X4
STRINGXP_009609384.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-37ZIM-like 1