PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009609404.1

Organism

Nicotiana tomentosiformis

Taxonomic ID

4098

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 145aa MW: 16580.5 Da PI: 5.6384

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009609404.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.5e-33	21	75	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LH++F++av+qLGG+e+AtPk+++++m+++gLtl+h+kSHLQkYRl XP_009609404.1 21 KPRLKWTPDLHQQFIDAVAQLGGPEEATPKSLMRVMNIHGLTLYHLKSHLQKYRL 75 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.717	18	78	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-30	19	77	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.25E-15	20	76	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.8E-23	21	76	IPR006447	Myb domain, plants
Pfam	PF00249	5.8E-9	23	74	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 145 aa Download sequence Send to blast
MALQNAQQNK DMNLLLSSDA KPRLKWTPDL HQQFIDAVAQ LGGPEEATPK SLMRVMNIHG 60 LTLYHLKSHL QKYRLGKSQA TDQSFDDNKQ EGKLELCATV PENTKENEIS RGLNQRTYFD 120 AEFREPQSDK LYLDNCDGAQ NQMNE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-22	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-22	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-22	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-22	21	77	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-22	20	77	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009609404.1	1e-106	PREDICTED: myb family transcription factor PHL8-like isoform X1
Refseq	XP_016442362.1	1e-104	PREDICTED: uncharacterized protein LOC107767787 isoform X1
Swissprot	F4I274	1e-33	PHL8_ARATH; Myb family transcription factor PHL8
TrEMBL	A0A1S3XRP9	1e-103	A0A1S3XRP9_TOBAC; uncharacterized protein LOC107767787 isoform X1
STRING	XP_009609404.1	1e-105	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6036	19	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69580.1	5e-36	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]